MD02G1101300.v1.1

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000699
Physical Location & Seq
Reverse (-)
8120075 .. 8120629
555 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1101300.v1.1.491

Sequence Viewer

Length: 450 bp
ATGGCTCCAGAATATGCTATGGAAGGGTTGTATTCAGTAAAATCGGATGTCTTCAGCTTTGGAGTACTTCTGCTTGAGATCATAACGGGGAGAAGGAACTTTTTAGGCTTCCATCGCACAAATTGTGCACCTACTCTTATAGGTTATGCTTGGCAATTATGGAATGAAACGAAAGGTTTGGAGTTGATGGATCCCTTGTTAAAAGATTCATGCAGTCCAAATGAATTTTTGAGGTACATCCACATTGGATTACTGTGTGTTCAAGAGGATGCAAACAACAGGCCGACCATGTCATCAGTTGTTCATATGTTAAAAACTGAAACTATTAGTCTTTCCAGACCTGAGAAACCAGCCTTCTTTACAGGGAGATATGTTGATCACCATGATCAAGTGCGTGCTCAAGATTGCTCAGCCAATGGTTTGACGATATCTACCGATGTTCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

150

Amino Acids

16.87

Weight (kDa)

5.92

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 104 6.3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 66, 236
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw21I GWGCWC 2 cut(s) 130, 400
Alw44I GTGCAC 1 cut(s) 126
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 1 cut(s) 281
ApaLI GTGCAC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 130, 400
BccI CCATC 2 cut(s) 120, 181
BclI TGATCA 2 cut(s) 376, 385
BlpI GCTNAGC 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 66
BmiI GGNNCC 2 cut(s) 6, 192
BmsI GCATC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 2 cut(s) 95, 384
BseGI GGATG 3 cut(s) 52, 237, 274
BseMII CTCAG 2 cut(s) 333, 423
BseSI GKGCMC 1 cut(s) 130
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 130, 400
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 130, 400
Bsp143I GATC 4 cut(s) 78, 190, 376, 385
Bsp1720I GCTNAGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 334, 422
BspLI GGNNCC 2 cut(s) 6, 192
BspPI GGATC 2 cut(s) 185, 198
BssMI GATC 4 cut(s) 78, 190, 376, 385
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 342, 409
BstF5I GGATG 3 cut(s) 52, 237, 274
BstKTI GATC 4 cut(s) 81, 193, 379, 388
BstMBI GATC 4 cut(s) 78, 190, 376, 385
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 3 cut(s) 52, 237, 274
Cac8I GCNNGC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 65, 235
CviAII CATG 3 cut(s) 210, 289, 383
CviJI RGCY 6 cut(s) 5, 57, 108, 283, 353, 413
CviKI_1 RGCY 6 cut(s) 5, 57, 108, 283, 353, 413
CviQI GTAC 2 cut(s) 65, 235
DdeI CTNAG 2 cut(s) 342, 409
DpnI GATC 4 cut(s) 80, 192, 378, 387
DpnII GATC 4 cut(s) 78, 190, 376, 385
Eco32I GATATC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 37
EcoRV GATATC 1 cut(s) 429
FaeI CATG 3 cut(s) 213, 292, 386
FatI CATG 3 cut(s) 209, 288, 382
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 376, 385
FokI GGATG 3 cut(s) 59, 224, 281
HaeIII GGCC 1 cut(s) 283
Hin1II CATG 3 cut(s) 213, 292, 386
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 4 cut(s) 8, 263, 336, 401
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 17, 87, 364
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 128, 213, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 342, 409
Hsp92II CATG 3 cut(s) 213, 292, 386
Ksp22I TGATCA 2 cut(s) 376, 385
Kzo9I GATC 4 cut(s) 78, 190, 376, 385
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 21, 265, 348, 349, 354, 363
LweI GCATC 1 cut(s) 259
MalI GATC 4 cut(s) 80, 192, 378, 387
MboI GATC 4 cut(s) 78, 190, 376, 385
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 130, 400
MluCI AATT 3 cut(s) 121, 155, 224
MnlI CCTC 2 cut(s) 225, 259
MseI TTAA 2 cut(s) 200, 311
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeI CATATG 1 cut(s) 306
NdeII GATC 4 cut(s) 78, 190, 376, 385
NlaIII CATG 3 cut(s) 213, 292, 386
NlaIV GGNNCC 2 cut(s) 6, 192
PfeI GAWTC 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 6, 192
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 289
RsaI GTAC 2 cut(s) 66, 236
RsaNI GTAC 2 cut(s) 65, 235
SaqAI TTAA 2 cut(s) 200, 311
Sau3AI GATC 4 cut(s) 78, 190, 376, 385
ScaI AGTACT 1 cut(s) 66
SduI GDGCHC 2 cut(s) 130, 400
SetI ASST 6 cut(s) 59, 133, 145, 178, 236, 343
SfaNI GCATC 1 cut(s) 259
SmlI CTYRAG 2 cut(s) 74, 399
SmoI CTYRAG 2 cut(s) 74, 399
Sse9I AATT 3 cut(s) 121, 155, 224
TaaI ACNGT 1 cut(s) 255
TasI AATT 3 cut(s) 121, 155, 224
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 200, 311
Tru9I TTAA 2 cut(s) 200, 311
TspDTI ATGAA 4 cut(s) 180, 198, 237, 293
Tth111I GACNNNGTC 1 cut(s) 289
VneI GTGCAC 1 cut(s) 126
XapI RAATTY 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.