MD05G1032400.v1.1

cellular response to molecule of fungal origin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000699
Physical Location & Seq
Reverse (-)
5298815 .. 5304071
5257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1032400.v1.1.491

Sequence Viewer

Length: 1818 bp
ATGCATTGTGACATGATCCCTTTCTACTTTCTCTCCTTACTTCTTATTGCATTGGCCAGTACTACCACAGGTGCTGCATACAGCAGCCATAACTGCTCAACTAGCTTGGCCCCAAACTCCACTGGCACCTCCTTCAAATCCTATCTCAATCAACTCCTCTCCAACCTTTCCTCCAACGCCAACCACGACGCCACCGGCTTTTACAACGCCACCACCGTGGGCCCAGCCTACGGCCTCTTTCTCTGCCGCCGGGACGTCTCGGCCAATGCTTGCAAAGAATGCGTGGTAAACGCAGCCTCGCAGGCACTCCTACTCTGCCCGGACAGCCAAGAGGCGCTGATATCGTATGACAATTGCACTCTAAGCTACTCAAACAAGCCCTTCTCATCCTGGGCGGCTGTCACCTCGCCTGTCCTTGTAATTTGGAGTCCGCAGGACTTGTCCCAATACGTTGAGAAACCAGCTAATGTCGCCGAGGTATTGAGGGCTACTTTGGGAAGCTTAGTCCCCAAGGCTGCCAATGCAATTGACAGGTTTGCCACGGAAGAAAGGCTTTTTCAATCAAACCTGATTTCTTCAGCTATCGTGTACAGCCTTGCGCAGTGCAGGCCGGACTTGTCCGCTGCCGATTGTAATGCGTGCCTTGAAGAAGGGAAAACGCAGTTAGCGCCTAGTTGCTGTGATGCAAAGCAAGGGGGACGAGTTCTATATGACAGTTGTAATATGAGGTTTGAAATGAATCCCTTCTACCAAGACGTGATTACCCCAACCTCGCCGACAAACAAATCTGTTGGTAATGACATGAAGACTGTCGAGTCATTGCAATTTAGATTGGGAACCATTGAAACTGCCACGAACAAGTTTTCAGATGATAACAAACTAGGTGAAGGAGGATTTGGTGCAGTTTTCAAGGGAACACTTGGTGATGGCCATGAAATAGCAGTAAAACGGCTATCGAAAAGCTCCACACAAGGTGTTCAAGAATTTCAGAATGAGGTTGTATTGGTAGCCAAACTTCAACACAGAAATCTTGTGAGACTTCTGGGATTTTGCTTGGAAGGAGAAGAAACCTTACTCGTCTATGAATATGTACCCAACAAAAGTCTTGATCATTTTCTATTTGAACCCAGAAAAAGAGAGCAGTTGGATTGGTCGAGACGTTGCATGATAATAGGAGGAATTGTTCGAGGAATTTTATACCTTCATGAAGATTCTAGGCTTAGAGTTATACATCGTGATTTAAAAGCTAGCAACATCTTATTAGACGGTGAAATGAATCCAAAAATATCTGATTTTGGGATGGCTAAAATGTTTGGAGTTGATGGTCAAACTCAAGGAAATACCAAAAGACCTGTCGGAACTCTTGGTTACATGGCTCCAGAATATGCACTAGAAGGATTATATTCAGTAAAATCAGACGTCTTTAGCTTCGGTGTACTCCTGCTTGAGATCACCACGGGGCGAAAGAATTTTTTAGGTTTTGACTGCCCTCTTCCTACACTTATAGCACGTGTTTGGCAATTGTGGAATGAAGGAAAAGGATTGGATTTGATGGATCCAATTTTGTCGAAAGATTCATGTCGGCCAGATGAATTTTTGAGATACATCCACATTGGACTACTGTGTGTTCAAGAGGATGCAAACAGTAGGCCGACCATGTCATCAGTTGCTTTACTGTTGAAAACTGAAACTATTAGTCTTTCCAAACCTGAGCGACCTGCATTTTTTACAGGAAGATCTGGAAATAAGCAGGATCAAATAGCTGCTAATAGTTGCACCATCAATGGTTTAACAATTTCTGATGATCTTCCCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000166 GO:0000187 GO:0000302 GO:0001568 GO:0001772 GO:0001775 GO:0001784 GO:0001817 GO:0001819 GO:0001820 GO:0001932 GO:0001934 GO:0001944 GO:0001945 GO:0001959 GO:0002090 GO:0002092 GO:0002218 GO:0002220 GO:0002223 GO:0002238 GO:0002250 GO:0002252 GO:0002253 GO:0002263 GO:0002274 GO:0002275 GO:0002281 GO:0002283 GO:0002351 GO:0002366 GO:0002376 GO:0002429 GO:0002431 GO:0002433 GO:0002442 GO:0002520 GO:0002521 GO:0002532 GO:0002554 GO:0002576 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002703 GO:0002705 GO:0002757 GO:0002758 GO:0002764 GO:0002768 GO:0002791 GO:0002793 GO:0002886 GO:0002888 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0004715 GO:0005102 GO:0005178 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006355 GO:0006464 GO:0006468 GO:0006606 GO:0006690 GO:0006691 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006836 GO:0006837 GO:0006886 GO:0006887 GO:0006897 GO:0006898 GO:0006909 GO:0006913 GO:0006928 GO:0006935 GO:0006950 GO:0006952 GO:0006954 GO:0006955 GO:0006979 GO:0007154 GO:0007155 GO:0007159 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007186 GO:0007229 GO:0007254 GO:0007257 GO:0007275 GO:0007596 GO:0007599 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0008284 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009636 GO:0009653 GO:0009719 GO:0009887 GO:0009889 GO:0009891 GO:0009893 GO:0009898 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010468 GO:0010543 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010803 GO:0015031 GO:0015696 GO:0015833 GO:0015844 GO:0015850 GO:0016020 GO:0016053 GO:0016192 GO:0016301 GO:0016310 GO:0016477 GO:0016740 GO:0016772 GO:0016773 GO:0017038 GO:0017076 GO:0017157 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019370 GO:0019538 GO:0019752 GO:0019814 GO:0019815 GO:0019897 GO:0019898 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019904 GO:0022407 GO:0022409 GO:0022610 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030054 GO:0030097 GO:0030098 GO:0030100 GO:0030139 GO:0030154 GO:0030155 GO:0030168 GO:0030193 GO:0030217 GO:0030554 GO:0030593 GO:0030595 GO:0031098 GO:0031234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0031410 GO:0031623 GO:0031625 GO:0031952 GO:0031954 GO:0031982 GO:0032009 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0032303 GO:0032368 GO:0032386 GO:0032388 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032645 GO:0032672 GO:0032673 GO:0032725 GO:0032752 GO:0032753 GO:0032872 GO:0032874 GO:0032879 GO:0032880 GO:0032890 GO:0032928 GO:0032940 GO:0032944 GO:0032946 GO:0032991 GO:0033003 GO:0033005 GO:0033006 GO:0033008 GO:0033036 GO:0033077 GO:0033365 GO:0033554 GO:0033628 GO:0033630 GO:0033674 GO:0034097 GO:0034103 GO:0034105 GO:0034110 GO:0034504 GO:0034599 GO:0034613 GO:0034614 GO:0035239 GO:0035295 GO:0035325 GO:0035556 GO:0035639 GO:0035690 GO:0036094 GO:0036211 GO:0036230 GO:0038063 GO:0038065 GO:0038083 GO:0038093 GO:0038094 GO:0038095 GO:0038096 GO:0038110 GO:0038156 GO:0040011 GO:0042035 GO:0042060 GO:0042101 GO:0042102 GO:0042108 GO:0042110 GO:0042113 GO:0042116 GO:0042119 GO:0042127 GO:0042129 GO:0042169 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042493 GO:0042542 GO:0042742 GO:0042886 GO:0043085 GO:0043112 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043235 GO:0043269 GO:0043300 GO:0043302 GO:0043304 GO:0043306 GO:0043313 GO:0043366 GO:0043368 GO:0043383 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043436 GO:0043506 GO:0043507 GO:0043549 GO:0044070 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045058 GO:0045059 GO:0045060 GO:0045061 GO:0045087 GO:0045088 GO:0045089 GO:0045124 GO:0045184 GO:0045309 GO:0045321 GO:0045335 GO:0045399 GO:0045401 GO:0045423 GO:0045425 GO:0045577 GO:0045579 GO:0045580 GO:0045582 GO:0045586 GO:0045588 GO:0045595 GO:0045597 GO:0045619 GO:0045621 GO:0045780 GO:0045785 GO:0045807 GO:0045859 GO:0045860 GO:0045921 GO:0045937 GO:0046328 GO:0046330 GO:0046394 GO:0046456 GO:0046631 GO:0046632 GO:0046634 GO:0046635 GO:0046637 GO:0046638 GO:0046640 GO:0046641 GO:0046643 GO:0046645 GO:0046649 GO:0046677 GO:0046777 GO:0046850 GO:0046852 GO:0046903 GO:0046907 GO:0048259 GO:0048260 GO:0048513 GO:0048514 GO:0048518 GO:0048522 GO:0048534 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050670 GO:0050671 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050730 GO:0050731 GO:0050764 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050817 GO:0050818 GO:0050839 GO:0050848 GO:0050850 GO:0050851 GO:0050852 GO:0050853 GO:0050863 GO:0050864 GO:0050865 GO:0050867 GO:0050870 GO:0050871 GO:0050878 GO:0050896 GO:0050900 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051090 GO:0051094 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051219 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051338 GO:0051347 GO:0051403 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051707 GO:0051716 GO:0055094 GO:0060255 GO:0060326 GO:0060341 GO:0060627 GO:0060759 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070301 GO:0070302 GO:0070304 GO:0070372 GO:0070486 GO:0070489 GO:0070663 GO:0070665 GO:0070669 GO:0070727 GO:0070887 GO:0071216 GO:0071226 GO:0071236 GO:0071310 GO:0071345 GO:0071352 GO:0071402 GO:0071404 GO:0071593 GO:0071621 GO:0071702 GO:0071704 GO:0071705 GO:0071900 GO:0071902 GO:0071944 GO:0072358 GO:0072359 GO:0072594 GO:0072676 GO:0072678 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090237 GO:0090322 GO:0090330 GO:0097159 GO:0097237 GO:0097367 GO:0097529 GO:0097530 GO:0097708 GO:0098542 GO:0098552 GO:0098562 GO:0098609 GO:0098657 GO:0098796 GO:0098797 GO:0098802 GO:0140029 GO:0140096 GO:1900046 GO:1900084 GO:1900086 GO:1901265 GO:1901363 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902105 GO:1902107 GO:1902531 GO:1902533 GO:1902563 GO:1903034 GO:1903037 GO:1903039 GO:1903305 GO:1903307 GO:1903506 GO:1903530 GO:1903532 GO:1903706 GO:1903708 GO:1904951 GO:1905952 GO:1990266 GO:2000026 GO:2000112 GO:2000191 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04014 ko04064 ko04072 ko04151 ko04380 ko04611 ko04650 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko05152 ko05167 ko05169 ko05203 ko05340 map04014 map04064 map04072 map04151 map04380 map04611 map04650 map04658 map04659 map04660 map04662 map04664 map04666 map05152 map05167 map05169 map05203 map05340
Pfam Domains
Protein Families
Pkinase_Tyr SH2

Protein Analysis

606

Amino Acids

66.48

Weight (kDa)

5.83

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 32 - 126 1.5e-18 Salt stress response/antifungal
Stress-antifung PF01657 160 - 245 2.3e-12 Salt stress response/antifungal
Pkinase PF00069 289 - 492 8.5e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 291 - 555 2.3e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 814
AatII GACGTC 2 cut(s) 258, 1422
Acc16I TGCGCA 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 1726
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 4 cut(s) 247, 395, 431, 621
AclWI GGATC 4 cut(s) 10, 1550, 1563, 1761
AcoI YGGCCR 4 cut(s) 54, 261, 928, 1583
AcsI RAATTY 4 cut(s) 983, 1191, 1468, 1592
AcuI CTGAAG 1 cut(s) 561
AcvI CACGTG 1 cut(s) 1511
AcyI GRCGYC 3 cut(s) 189, 255, 1419
AdeI CACNNNGTG 2 cut(s) 923, 974
AfaI GTAC 4 cut(s) 61, 590, 1092, 1437
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 1510
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AleI CACNNNNGTG 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 1167, 1199
AluBI AGCT 9 cut(s) 105, 366, 464, 501, 581, 963, 1247, 1428, 1763
AluI AGCT 9 cut(s) 105, 366, 464, 501, 581, 963, 1247, 1428, 1763
Alw26I GTCTC 3 cut(s) 262, 1030, 1150
AlwI GGATC 4 cut(s) 10, 1550, 1563, 1761
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 9 cut(s) 54, 108, 220, 232, 261, 608, 928, 1583, 1649
ApaI GGGCCC 1 cut(s) 224
ApeKI GCWGC 6 cut(s) 74, 84, 293, 515, 623, 1763
ApoI RAATTY 4 cut(s) 983, 1191, 1468, 1592
ArsI GACNNNNNNTTYG 2 cut(s) 1338, 1370
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 3 cut(s) 337, 601, 670
AspS9I GGNCC 3 cut(s) 109, 220, 221
AsuC2I CCSGG 2 cut(s) 251, 320
AsuHPI GGTGA 5 cut(s) 394, 896, 935, 1280, 1444
AsuNHI GCTAGC 1 cut(s) 1247
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 2 cut(s) 56, 930
BamHI GGATCC 1 cut(s) 1555
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 224
BarI GAAGNNNNNNTAC 4 cut(s) 999, 1031, 1056, 1088
BbrPI CACGTG 1 cut(s) 1511
BbsI GAAGAC 1 cut(s) 812
BbvI GCAGC 6 cut(s) 61, 96, 305, 502, 610, 1750
BccI CCATC 5 cut(s) 920, 1294, 1316, 1546, 1787
BceAI ACGGC 2 cut(s) 247, 965
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 391
BclI TGATCA 1 cut(s) 1108
BcnI CCSGG 2 cut(s) 251, 320
BcoDI GTCTC 3 cut(s) 262, 1030, 1150
BfaI CTAG 6 cut(s) 102, 672, 881, 1215, 1248, 1391
BfoI RGCGCY 2 cut(s) 338, 671
BfuAI ACCTGC 1 cut(s) 1726
BglI GCCNNNNNGGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 1736
BisI GCNGC 8 cut(s) 75, 85, 247, 294, 396, 516, 624, 1764
BlsI GCNGC 8 cut(s) 76, 86, 248, 295, 397, 517, 625, 1765
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 251, 320, 391
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 3 cut(s) 109, 220, 221
BmiI GGNNCC 6 cut(s) 111, 127, 222, 838, 1377, 1557
BmrFI CCNGG 3 cut(s) 251, 320, 391
BmsI GCATC 2 cut(s) 673, 1627
BmtI GCTAGC 1 cut(s) 1251
BpiI GAAGAC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 1362
Bpu10I CCTNAGC 1 cut(s) 1710
BpuEI CTTGAG 2 cut(s) 1317, 1466
BpuMI CCSGG 2 cut(s) 251, 320
BsaAI YACGTR 1 cut(s) 1511
BsaHI GRCGYC 3 cut(s) 189, 255, 1419
BsaJI CCNNGG 6 cut(s) 216, 390, 474, 510, 540, 1455
BsaXI ACNNNNNCTCC 6 cut(s) 17, 47, 155, 185, 1167, 1197
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 57, 127
Bse3DI GCAATG 1 cut(s) 818
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 6 cut(s) 216, 390, 474, 510, 540, 1455
BseGI GGATG 4 cut(s) 386, 1305, 1605, 1642
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 818
BseMII CTCAG 1 cut(s) 1701
BseNI ACTGG 2 cut(s) 57, 127
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 6 cut(s) 61, 96, 305, 502, 610, 1750
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 2 cut(s) 625, 921
BshFI GGCC 9 cut(s) 56, 110, 222, 234, 263, 610, 930, 1585, 1651
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 4 cut(s) 195, 250, 320, 611
BslFI GGGAC 4 cut(s) 266, 427, 491, 711
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 3 cut(s) 262, 1030, 1150
BsmBI CGTCTC 2 cut(s) 262, 1150
BsmFI GGGAC 4 cut(s) 266, 427, 491, 711
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 9 cut(s) 56, 110, 222, 234, 263, 610, 930, 1585, 1651
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
BspACI CCGC 4 cut(s) 247, 395, 431, 621
BspANI GGCC 9 cut(s) 56, 110, 222, 234, 263, 610, 930, 1585, 1651
BspCNI CTCAG 1 cut(s) 1702
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 6 cut(s) 111, 127, 222, 838, 1377, 1557
BspMI ACCTGC 1 cut(s) 1726
BspOI GCTAGC 1 cut(s) 1251
BspPI GGATC 4 cut(s) 10, 1550, 1563, 1761
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 818
BsrFI RCCGGY 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 2 cut(s) 57, 127
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 6 cut(s) 216, 390, 474, 510, 540, 1455
BssMI GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
BssNI GRCGYC 3 cut(s) 189, 255, 1419
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 7 cut(s) 217, 716, 811, 1268, 1623, 1646, 1677
Bst6I CTCTTC 1 cut(s) 1497
BstACI GRCGYC 3 cut(s) 189, 255, 1419
BstAPI GCANNNNNTGC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 1511
BstC8I GCNNGC 5 cut(s) 271, 303, 608, 640, 1249
BstDEI CTNAG 4 cut(s) 362, 502, 1220, 1710
BstDSI CCRYGG 3 cut(s) 216, 540, 1455
BstF5I GGATG 4 cut(s) 386, 1305, 1605, 1642
BstH2I RGCGCY 2 cut(s) 338, 671
BstHHI GCGC 3 cut(s) 337, 601, 670
BstKTI GATC 7 cut(s) 18, 1111, 1452, 1558, 1739, 1756, 1807
BstMAI GTCTC 3 cut(s) 262, 1030, 1150
BstMBI GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 249, 318, 389
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 6 cut(s) 61, 96, 305, 502, 610, 1750
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 2 cut(s) 1555, 1736
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 1555, 1736
BsuRI GGCC 9 cut(s) 56, 110, 222, 234, 263, 610, 930, 1585, 1651
BtgI CCRYGG 3 cut(s) 216, 540, 1455
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 4 cut(s) 386, 1305, 1605, 1642
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 120, 608
BveI ACCTGC 1 cut(s) 1726
Cac8I GCNNGC 5 cut(s) 271, 303, 608, 640, 1249
CaiI CAGNNNCTG 1 cut(s) 74
CciI TCATGA 1 cut(s) 1204
CfoI GCGC 3 cut(s) 337, 601, 670
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 109, 220, 221
CseI GACGC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 60, 589, 1091, 1436
CviAII CATG 8 cut(s) 13, 802, 932, 1165, 1205, 1372, 1578, 1657
CviQI GTAC 4 cut(s) 60, 589, 1091, 1436
DdeI CTNAG 4 cut(s) 362, 502, 1220, 1710
DpnI GATC 7 cut(s) 17, 1110, 1451, 1557, 1738, 1755, 1806
DpnII GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
DraI TTTAAA 1 cut(s) 1242
DraIII CACNNNGTG 2 cut(s) 923, 974
DrdI GACNNNNNNGTC 1 cut(s) 814
DseDI GACNNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 4 cut(s) 54, 261, 928, 1583
Eam1104I CTCTTC 1 cut(s) 1497
EarI CTCTTC 1 cut(s) 1497
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 561
Eco72I CACGTG 1 cut(s) 1511
EcoRII CCWGG 1 cut(s) 389
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 2 cut(s) 262, 1150
FaeI CATG 8 cut(s) 16, 805, 935, 1168, 1208, 1375, 1581, 1660
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 4 cut(s) 266, 427, 491, 711
FatI CATG 8 cut(s) 12, 801, 931, 1164, 1204, 1371, 1577, 1656
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 8 cut(s) 75, 85, 247, 294, 396, 516, 624, 1764
FokI GGATG 4 cut(s) 373, 1312, 1592, 1649
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 8 cut(s) 75, 85, 247, 294, 396, 516, 624, 1764
FspBI CTAG 6 cut(s) 102, 672, 881, 1215, 1248, 1391
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 3 cut(s) 336, 600, 669
GluI GCNGC 8 cut(s) 75, 85, 247, 294, 396, 516, 624, 1764
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 1362
HaeII RGCGCY 2 cut(s) 338, 671
HaeIII GGCC 9 cut(s) 56, 110, 222, 234, 263, 610, 930, 1585, 1651
HapII CCGG 4 cut(s) 195, 250, 320, 611
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 337, 601, 670
Hin1I GRCGYC 3 cut(s) 189, 255, 1419
Hin1II CATG 8 cut(s) 16, 805, 935, 1168, 1208, 1375, 1581, 1660
Hin6I GCGC 3 cut(s) 335, 599, 668
HinP1I GCGC 3 cut(s) 335, 599, 668
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 6 cut(s) 427, 739, 815, 1211, 1276, 1574
HpaII CCGG 4 cut(s) 195, 250, 320, 611
HphI GGTGA 5 cut(s) 394, 896, 935, 1280, 1444
Hpy166II GTNNAC 3 cut(s) 289, 589, 1436
Hpy188I TCNGA 6 cut(s) 868, 990, 1291, 1358, 1417, 1801
Hpy188III TCNNGA 8 cut(s) 980, 1106, 1155, 1205, 1235, 1379, 1631, 1740
Hpy8I GTNNAC 3 cut(s) 289, 589, 1436
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 9 cut(s) 142, 391, 644, 754, 881, 1052, 1211, 1388, 1526
HpyCH4III ACNGT 7 cut(s) 217, 716, 811, 1268, 1623, 1646, 1677
HpyCH4IV ACGT 6 cut(s) 255, 450, 756, 1159, 1419, 1510
HpyF3I CTNAG 4 cut(s) 362, 502, 1220, 1710
HpySE526I ACGT 6 cut(s) 255, 450, 756, 1159, 1419, 1510
Hsp92I GRCGYC 3 cut(s) 189, 255, 1419
Hsp92II CATG 8 cut(s) 16, 805, 935, 1168, 1208, 1375, 1581, 1660
HspAI GCGC 3 cut(s) 335, 599, 668
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
LmnI GCTCC 2 cut(s) 968, 1381
Lsp1109I GCAGC 6 cut(s) 61, 96, 305, 502, 610, 1750
LweI GCATC 2 cut(s) 673, 1627
MaeI CTAG 6 cut(s) 102, 672, 881, 1215, 1248, 1391
MaeII ACGT 6 cut(s) 255, 450, 756, 1159, 1419, 1510
MaeIII GTNAC 3 cut(s) 8, 400, 1367
MalI GATC 7 cut(s) 17, 1110, 1451, 1557, 1738, 1755, 1806
MboI GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
MboII GAAGA 9 cut(s) 557, 567, 659, 817, 1076, 1220, 1484, 1746, 1799
MfeI CAATTG 3 cut(s) 352, 525, 1520
MflI RGATCY 2 cut(s) 1555, 1736
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 2 cut(s) 56, 930
MluNI TGGCCA 2 cut(s) 56, 930
MlyI GAGTC 2 cut(s) 436, 824
MmeI TCCRAC 4 cut(s) 186, 198, 1125, 1336
Mox20I TGGCCA 2 cut(s) 56, 930
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 743
MscI TGGCCA 2 cut(s) 56, 930
MseI TTAA 3 cut(s) 1241, 1790, 1816
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 2 cut(s) 56, 930
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 4 cut(s) 195, 250, 320, 611
MspR9I CCNGG 3 cut(s) 251, 320, 391
MunI CAATTG 3 cut(s) 352, 525, 1520
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 391
NciI CCSGG 2 cut(s) 251, 320
NdeII GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
NheI GCTAGC 1 cut(s) 1247
NlaIII CATG 8 cut(s) 16, 805, 935, 1168, 1208, 1375, 1581, 1660
NlaIV GGNNCC 6 cut(s) 111, 127, 222, 838, 1377, 1557
NmeAIII GCCGAG 2 cut(s) 239, 499
NmuCI GTSAC 2 cut(s) 8, 400
NsbI TGCGCA 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 215
PagI TCATGA 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 213
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 4 cut(s) 739, 1211, 1276, 1574
PflFI GACNNNGTC 1 cut(s) 1657
PkrI GCNGC 8 cut(s) 76, 86, 248, 295, 397, 517, 625, 1765
PleI GAGTC 2 cut(s) 435, 823
PmaCI CACGTG 1 cut(s) 1511
PmlI CACGTG 1 cut(s) 1511
PpsI GAGTC 2 cut(s) 435, 823
Ppu21I YACGTR 1 cut(s) 1511
Psp6I CCWGG 1 cut(s) 389
PspCI CACGTG 1 cut(s) 1511
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 6 cut(s) 111, 127, 222, 838, 1377, 1557
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 3 cut(s) 109, 220, 221
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 1555, 1736
PsyI GACNNNGTC 1 cut(s) 1657
RsaI GTAC 4 cut(s) 61, 590, 1092, 1437
RsaNI GTAC 4 cut(s) 60, 589, 1091, 1436
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 3 cut(s) 1241, 1790, 1816
SatI GCNGC 8 cut(s) 75, 85, 247, 294, 396, 516, 624, 1764
Sau3AI GATC 7 cut(s) 15, 1108, 1449, 1555, 1736, 1753, 1804
Sau96I GGNCC 3 cut(s) 109, 220, 221
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 2 cut(s) 436, 824
ScrFI CCNGG 3 cut(s) 251, 320, 391
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 2 cut(s) 673, 1627
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 1332, 1445
SmoI CTYRAG 2 cut(s) 1332, 1445
SsiI CCGC 4 cut(s) 247, 395, 431, 621
SspMI CTAG 6 cut(s) 102, 672, 881, 1215, 1248, 1391
StyD4I CCNGG 3 cut(s) 249, 318, 389
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 7 cut(s) 217, 716, 811, 1268, 1623, 1646, 1677
TaiI ACGT 6 cut(s) 258, 453, 759, 1162, 1422, 1513
TaqI TCGA 5 cut(s) 813, 956, 1154, 1186, 1568
TatI WGTACW 3 cut(s) 59, 588, 1435
TauI GCSGC 2 cut(s) 249, 398
TfiI GAWTC 4 cut(s) 739, 1211, 1276, 1574
Tru1I TTAA 3 cut(s) 1241, 1790, 1816
Tru9I TTAA 3 cut(s) 1241, 1790, 1816
TscAI CASTG 2 cut(s) 127, 608
TseFI GTSAC 2 cut(s) 8, 400
TseI GCWGC 6 cut(s) 74, 84, 293, 515, 623, 1763
Tsp45I GTSAC 2 cut(s) 8, 400
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 2 cut(s) 127, 608
Tth111I GACNNNGTC 1 cut(s) 1657
XapI RAATTY 4 cut(s) 983, 1191, 1468, 1592
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 6 cut(s) 102, 672, 881, 1215, 1248, 1391
ZraI GACGTC 2 cut(s) 256, 1420
ZrmI AGTACT 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.