Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

30491842 .. 30495355

Gene Structure 3514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG173600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAGAAGTAGTGATCCTTCTCTTCCTTTCAGTGGTCACCCTGCTAAGCTTTCCGTCTACAAAAGCCTACTACCTCTACCATATCTGCCCCAACACCACCGTCTTCACCCCAAACTCTACCTTCCAGTCCAACCTCAACCACCTCCTCTCTACTCTCTCCTCCAACGCCACGCGCACCGGCTTCTACAACGCCACCTCCGGCCGTACCCCTAACGACACCGTCTACGGCCTCTTCCTCTGCCGTGGTGACGTCACCACCACCACTTGCAAGTCCTGCGTGACCACCGCAACCTCCAAGGTCGTGCAGCGCTGCCCGGTCGAGAAAGAGGTTGTGATATGGTACGATGACTGCATGCTACGCTACTCCAAGAAGTCCTTCTTCTCTGTCGAAGCCGAGTCGCCGAAGGTGTCCCTGTTGAACACCCAAAACGTCAGCATCAGCATCAAACCGAACCGGTTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

8.94

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 124	5.8e-30	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccI	GTMKAC	2 cut(s)	59, 225
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	10
AcoI	YGGCCR	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	208, 344
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	51, 465
AluI	AGCT	2 cut(s)	51, 465
AlwI	GGATC	1 cut(s)	10
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	2 cut(s)	202, 229
ApeKI	GCWGC	2 cut(s)	307, 312
AsiGI	ACCGGT	1 cut(s)	456
Asp700I	GAANNNNTTC	2 cut(s)	377, 458
AspLEI	GCGC	2 cut(s)	177, 312
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	4 cut(s)	31, 100, 247, 260
BarI	GAAGNNNNNNTAC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	299, 319
BceAI	ACGGC	3 cut(s)	189, 228, 244
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	2 cut(s)	308, 313
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	309, 314
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	447, 453
BpiI	GAAGAC	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	244, 297
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	179, 456
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	244, 297
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	137, 151
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	299, 319
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	175
Bsh1285I	CGRYCG	2 cut(s)	205, 321
BshFI	GGCC	2 cut(s)	204, 231
BshTI	ACCGGT	1 cut(s)	456
BsiEI	CGRYCG	2 cut(s)	205, 321
BsiSI	CCGG	4 cut(s)	180, 201, 317, 457
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	204, 231
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	204, 231
BspFNI	CGCG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	179, 456
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	2 cut(s)	179, 456
BssECI	CCNNGG	2 cut(s)	244, 297
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	103, 223
Bst6I	CTCTTC	2 cut(s)	29, 239
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	177, 312
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMCI	CGRYCG	2 cut(s)	205, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 360
BstNSI	RCATGY	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	299, 319
BstV2I	GAAGAC	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	204, 231
BtgI	CCRYGG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	177, 312
Cfr10I	RCCGGY	2 cut(s)	179, 456
Csp6I	GTAC	2 cut(s)	207, 343
CspAI	ACCGGT	1 cut(s)	456
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	7 cut(s)	51, 68, 183, 204, 231, 395, 465
CviKI_1	RGCY	7 cut(s)	51, 68, 183, 204, 231, 395, 465
CviQI	GTAC	2 cut(s)	207, 343
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	29, 239
EarI	CTCTTC	2 cut(s)	29, 239
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	297
Eco47III	AGCGCT	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	84, 340, 356
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 365, 397
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	1 cut(s)	354
FblI	GTMKAC	2 cut(s)	59, 225
Fnu4HI	GCNGC	2 cut(s)	308, 313
Fsp4HI	GCNGC	2 cut(s)	308, 313
FspBI	CTAG	1 cut(s)	466
GlaI	GCGC	2 cut(s)	176, 311
GluI	GCNGC	2 cut(s)	308, 313
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	204, 231
HapII	CCGG	4 cut(s)	180, 201, 317, 457
HhaI	GCGC	2 cut(s)	177, 312
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	175, 310
HinP1I	GCGC	2 cut(s)	175, 310
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	4 cut(s)	180, 201, 317, 457
HphI	GGTGA	4 cut(s)	31, 100, 247, 260
Hpy166II	GTNNAC	2 cut(s)	60, 226
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	60, 226
HpyAV	CCTTC	4 cut(s)	29, 133, 388, 400
HpyCH4III	ACNGT	2 cut(s)	103, 223
HpyCH4IV	ACGT	2 cut(s)	252, 432
HpyCH4V	TGCA	3 cut(s)	270, 307, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 360
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	252, 432
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	175, 310
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	56, 140, 193, 214, 289, 330, 428
Lsp1109I	GCAGC	2 cut(s)	299, 319
LweI	GCATC	2 cut(s)	447, 453
MaeI	CTAG	1 cut(s)	466
MaeII	ACGT	2 cut(s)	252, 432
MaeIII	GTNAC	4 cut(s)	37, 248, 253, 280
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	4 cut(s)	16, 97, 226, 373
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	156, 189
MroXI	GAANNNNTTC	2 cut(s)	377, 458
MspI	CCGG	4 cut(s)	180, 201, 317, 457
MspR9I	CCNGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	276, 360
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	4 cut(s)	37, 248, 253, 280
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PdmI	GAANNNNTTC	2 cut(s)	377, 458
PflFI	GACNNNGTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	309, 314
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PspEI	GGTNACC	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	208, 344
RsaNI	GTAC	2 cut(s)	207, 343
SatI	GCNGC	2 cut(s)	308, 313
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	447, 453
SphI	GCATGC	1 cut(s)	358
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	103, 223
TaiI	ACGT	2 cut(s)	255, 435
TaqI	TCGA	2 cut(s)	321, 390
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	4 cut(s)	37, 248, 253, 280
TseI	GCWGC	2 cut(s)	307, 312
Tsp45I	GTSAC	4 cut(s)	37, 248, 253, 280
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	221
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	59, 225
XmnI	GAANNNNTTC	2 cut(s)	377, 458
XspI	CTAG	1 cut(s)	466
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.