Rw5G030050

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
47299365 .. 47309480
10116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030050.1

Sequence Viewer

Length: 1002 bp
ATGGCAGAAGTAGTGATCCTTCTCTTCCTTTCAGTGGTCACCCTGCTAAGCTTTCCGTCTACAAAAGCCTACTACCTCTACCATATCTGCCCCAACACCACCGTCTTCACCCCAAACTCTACCTTCCAGTCCAACCTCAACCACCTCCTCTCTACTCTCTCCTCCAACGCCACGCGCACCGGCTTCTACAACGCCACCTCCGGCCGTACCCCTAACGACACCGTCTACGGCCTCTTCCTCTGCCGCGGTGACGTCACCACCACCACTTGCAAGTCCTGCGTGACCACCGCAACCTCCGAGGTCGTGCAGCGCTGCCCGGTCGAGAAAGAGGTTGTGATATGGTACGATGACTGCATGCTACGCTACTCCAACAAGTCCTTCTTCTCTGTCGAAGCCGAGTCACCGAAGGTGTCCCTGTTGAACACCCAAAACGTCAGCATCAGCATCGAACCGAACCGGTTCAGCCAGGTTTTGGCGAGCTTGACGGAGGTGGCCACGGCGTCTGTGAACAGCAACTATAAGTTCGCGACGAGAGAGGTGAACATCACGGGGCTGATTAGCTTGTACAGTTTGGAGCAGTGCACGCAGGACTTGTCTAAAGCCAAACGTACTCTGAGAAACGCTGTGTACTTGATTAGCATCGGAGGCTGTGATTATTTCAGCTTCTATGCTACATACCCAAATGCGACCGAGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAGCTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAATATTCGGTGTTACTGAAGGGTGCGTTGAAGGACTTCTGAATTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATCTTTAACTATTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATAA

Protein Analysis

333

Amino Acids

36.79

Weight (kDa)

5.71

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 30 - 125 1.4e-29 Salt stress response/antifungal
Lipase_GDSL PF00657 192 - 325 2.4e-09 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 823
AccB1I GGYRCC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 472
AccI GTMKAC 2 cut(s) 59, 225
AccII CGCG 3 cut(s) 175, 246, 527
AciI CCGC 3 cut(s) 244, 246, 288
AclWI GGATC 3 cut(s) 10, 805, 984
AcoI YGGCCR 2 cut(s) 202, 492
AcsI RAATTY 1 cut(s) 868
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 252, 500
AfaI GTAC 5 cut(s) 208, 344, 566, 610, 629
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 34, 472, 703
AgeI ACCGGT 1 cut(s) 456
AgsI TTSAA 5 cut(s) 421, 749, 857, 940, 948
AjnI CCWGG 1 cut(s) 465
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 7 cut(s) 51, 480, 561, 663, 762, 893, 899
AluI AGCT 7 cut(s) 51, 480, 561, 663, 762, 893, 899
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 1 cut(s) 817
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 3 cut(s) 10, 805, 984
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 3 cut(s) 202, 229, 492
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 2 cut(s) 307, 312
ApoI RAATTY 1 cut(s) 868
AsiGI ACCGGT 1 cut(s) 456
Asp700I GAANNNNTTC 2 cut(s) 458, 861
AspLEI GCGC 2 cut(s) 177, 312
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 6 cut(s) 31, 100, 247, 260, 393, 550
BaeGI GKGCMC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 807
BanII GRGCYC 1 cut(s) 696
BarI GAAGNNNNNNTAC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 299, 319
BceAI ACGGC 3 cut(s) 189, 244, 513
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 3 cut(s) 244, 308, 313
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 3 cut(s) 245, 309, 314
Bme1390I CCNGG 2 cut(s) 317, 467
BmiI GGNNCC 1 cut(s) 809
BmrFI CCNGG 2 cut(s) 317, 467
BmsI GCATC 4 cut(s) 447, 453, 648, 955
BpiI GAAGAC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 763
Bpu1102I GCTNAGC 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 979
BsaBI GATNNNNATC 1 cut(s) 638
BsaHI GRCGYC 2 cut(s) 252, 500
BsaJI CCNNGG 3 cut(s) 244, 297, 495
BsaWI WCCGGW 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 472, 703
Bse118I RCCGGY 2 cut(s) 179, 456
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 638
BseBI CCWGG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 979
BseDI CCNNGG 3 cut(s) 244, 297, 495
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 3 cut(s) 34, 472, 703
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 605, 963
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 137, 151
BseSI GKGCMC 1 cut(s) 584
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 299, 319
BseYI CCCAGC 1 cut(s) 696
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 3 cut(s) 175, 246, 527
Bsh1285I CGRYCG 3 cut(s) 205, 321, 690
BshFI GGCC 3 cut(s) 204, 231, 494
BshNI GGYRCC 1 cut(s) 807
BshTI ACCGGT 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 979
BsiEI CGRYCG 3 cut(s) 205, 321, 690
BsiHKAI GWGCWC 1 cut(s) 584
BsiSI CCGG 4 cut(s) 180, 201, 317, 457
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 3 cut(s) 34, 472, 703
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 3 cut(s) 204, 231, 494
Bsp1286I GDGCHC 2 cut(s) 584, 696
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 15, 797, 976
Bsp1720I GCTNAGC 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 527
BspACI CCGC 3 cut(s) 244, 246, 288
BspANI GGCC 3 cut(s) 204, 231, 494
BspCNI CTCAG 2 cut(s) 606, 964
BspDI ATCGAT 1 cut(s) 979
BspFNI CGCG 3 cut(s) 175, 246, 527
BspLI GGNNCC 1 cut(s) 809
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 3 cut(s) 10, 805, 984
BspT107I GGYRCC 1 cut(s) 807
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 2 cut(s) 179, 456
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 2 cut(s) 179, 456
BssECI CCNNGG 3 cut(s) 244, 297, 495
BssMI GATC 3 cut(s) 15, 797, 976
BssNI GRCGYC 2 cut(s) 252, 500
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 103, 223, 569, 742
Bst6I CTCTTC 2 cut(s) 29, 239
BstACI GRCGYC 2 cut(s) 252, 500
BstAPI GCANNNNNTGC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 3 cut(s) 356, 478, 584
BstDEI CTNAG 4 cut(s) 47, 614, 763, 972
BstDSI CCRYGG 2 cut(s) 244, 495
BstEII GGTNACC 1 cut(s) 37
BstFNI CGCG 3 cut(s) 175, 246, 527
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 2 cut(s) 177, 312
BstKTI GATC 3 cut(s) 18, 800, 979
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 3 cut(s) 15, 797, 976
BstMCI CGRYCG 3 cut(s) 205, 321, 690
BstMWI GCNNNNNNNGC 4 cut(s) 276, 360, 583, 645
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 358
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 315, 465
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 3 cut(s) 175, 246, 527
BstV1I GCAGC 2 cut(s) 299, 319
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 797
BstYI RGATCY 1 cut(s) 797
BstZI CGGCCG 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 979
BsuRI GGCC 3 cut(s) 204, 231, 494
BsuTUI ATCGAT 1 cut(s) 979
BtgI CCRYGG 2 cut(s) 244, 495
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 3 cut(s) 39, 584, 738
BtuMI TCGCGA 1 cut(s) 527
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 3 cut(s) 356, 478, 584
CfoI GCGC 2 cut(s) 177, 312
Cfr10I RCCGGY 2 cut(s) 179, 456
Cfr42I CCGCGG 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 979
CseI GACGC 1 cut(s) 489
Csp6I GTAC 5 cut(s) 207, 343, 565, 609, 628
CspAI ACCGGT 1 cut(s) 456
CviAII CATG 1 cut(s) 355
CviQI GTAC 5 cut(s) 207, 343, 565, 609, 628
DdeI CTNAG 4 cut(s) 47, 614, 763, 972
DpnI GATC 3 cut(s) 17, 799, 978
DpnII GATC 3 cut(s) 15, 797, 976
EaeI YGGCCR 2 cut(s) 202, 492
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 29, 239
EarI CTCTTC 2 cut(s) 29, 239
EclXI CGGCCG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 696
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 864
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 696
FaeI CATG 1 cut(s) 358
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 397
FatI CATG 1 cut(s) 354
FblI GTMKAC 2 cut(s) 59, 225
Fnu4HI GCNGC 3 cut(s) 244, 308, 313
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 244, 308, 313
FspBI CTAG 1 cut(s) 896
GlaI GCGC 2 cut(s) 176, 311
GluI GCNGC 3 cut(s) 244, 308, 313
GsaI CCCAGC 1 cut(s) 700
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 3 cut(s) 204, 231, 494
HapII CCGG 4 cut(s) 180, 201, 317, 457
HgaI GACGC 1 cut(s) 489
HhaI GCGC 2 cut(s) 177, 312
Hin1I GRCGYC 2 cut(s) 252, 500
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 2 cut(s) 175, 310
HinP1I GCGC 2 cut(s) 175, 310
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 2 cut(s) 398, 936
HpaII CCGG 4 cut(s) 180, 201, 317, 457
HphI GGTGA 6 cut(s) 31, 100, 247, 260, 393, 550
Hpy166II GTNNAC 6 cut(s) 60, 226, 508, 541, 582, 628
Hpy188I TCNGA 5 cut(s) 298, 615, 644, 789, 867
Hpy188III TCNNGA 4 cut(s) 322, 526, 721, 933
Hpy8I GTNNAC 6 cut(s) 60, 226, 508, 541, 582, 628
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 7 cut(s) 29, 133, 388, 400, 765, 839, 851
HpyCH4III ACNGT 4 cut(s) 103, 223, 569, 742
HpyCH4IV ACGT 3 cut(s) 252, 432, 607
HpyCH4V TGCA 7 cut(s) 270, 307, 354, 582, 782, 818, 995
HpyF10VI GCNNNNNNNGC 4 cut(s) 276, 360, 583, 645
HpyF3I CTNAG 4 cut(s) 47, 614, 763, 972
HpySE526I ACGT 3 cut(s) 252, 432, 607
Hsp92I GRCGYC 2 cut(s) 252, 500
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 2 cut(s) 175, 310
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 15, 797, 976
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 2 cut(s) 299, 319
LweI GCATC 4 cut(s) 447, 453, 648, 955
MaeI CTAG 1 cut(s) 896
MaeII ACGT 3 cut(s) 252, 432, 607
MaeIII GTNAC 7 cut(s) 37, 248, 253, 280, 399, 728, 838
MalI GATC 3 cut(s) 17, 799, 978
MboI GATC 3 cut(s) 15, 797, 976
MboII GAAGA 4 cut(s) 16, 97, 226, 373
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 2 cut(s) 584, 696
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 2 cut(s) 777, 868
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 3 cut(s) 156, 189, 393
Mox20I TGGCCA 1 cut(s) 494
MroXI GAANNNNTTC 2 cut(s) 458, 861
MscI TGGCCA 1 cut(s) 494
MseI TTAA 2 cut(s) 954, 987
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 4 cut(s) 180, 201, 317, 457
MspR9I CCNGG 2 cut(s) 317, 467
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 3 cut(s) 175, 246, 527
MwoI GCNNNNNNNGC 4 cut(s) 276, 360, 583, 645
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 15, 797, 976
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 809
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 5 cut(s) 37, 248, 253, 280, 399
NruI TCGCGA 1 cut(s) 527
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PdmI GAANNNNTTC 2 cut(s) 458, 861
PfeI GAWTC 1 cut(s) 936
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 456
PkrI GCNGC 3 cut(s) 245, 309, 314
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 696
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 809
PsuI RGATCY 1 cut(s) 797
PsyI GACNNNGTC 1 cut(s) 221
RruI TCGCGA 1 cut(s) 527
RsaI GTAC 5 cut(s) 208, 344, 566, 610, 629
RsaNI GTAC 5 cut(s) 207, 343, 565, 609, 628
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 2 cut(s) 954, 987
SatI GCNGC 3 cut(s) 244, 308, 313
Sau3AI GATC 3 cut(s) 15, 797, 976
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 317, 467
SduI GDGCHC 2 cut(s) 584, 696
SfaNI GCATC 4 cut(s) 447, 453, 648, 955
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SphI GCATGC 1 cut(s) 358
Sse9I AATT 2 cut(s) 777, 868
SsiI CCGC 3 cut(s) 244, 246, 288
SspI AATATT 2 cut(s) 831, 944
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 315, 465
TaaI ACNGT 4 cut(s) 103, 223, 569, 742
TaiI ACGT 3 cut(s) 255, 435, 610
TaqI TCGA 4 cut(s) 321, 390, 447, 979
TaqII GACCGA 1 cut(s) 704
TasI AATT 2 cut(s) 777, 868
TatI WGTACW 2 cut(s) 564, 627
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 936
Tru1I TTAA 2 cut(s) 954, 987
Tru9I TTAA 2 cut(s) 954, 987
TscAI CASTG 3 cut(s) 39, 584, 745
TseFI GTSAC 5 cut(s) 37, 248, 253, 280, 399
TseI GCWGC 2 cut(s) 307, 312
Tsp45I GTSAC 5 cut(s) 37, 248, 253, 280, 399
TspGWI ACGGA 2 cut(s) 45, 500
TspRI CASTG 3 cut(s) 39, 584, 745
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 472
VneI GTGCAC 1 cut(s) 580
XapI RAATTY 1 cut(s) 868
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 2 cut(s) 59, 225
XmnI GAANNNNTTC 2 cut(s) 458, 861
XspI CTAG 1 cut(s) 896
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.