Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

2583002 .. 2722307

Gene Structure 139306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG036900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 943 bp

ATGGCAGAAGTGGTCCTTCTCTTCCTTTCAATGGTTGCCTTGCTCGGCTTTCCCACTACAACAGCCGACTATCTCGTCCATGTCTGCCCAAACACCACCGTCTTCACCCCAAACTCCACCTTCCAAACCAATCGCAACGAATTGCTGTCTACCCTTGTCTCTAATGCTTACCAGACCACTGCTGGCAGCCAGATCTCAACAGAGACCGTGGACGGCCTCTTCCTCTGCCGCAGTGACGTGTCCACAGACGTTTGCAAAGTCTGCGTGGAGACCGCGGCCTCAGAGGTTGTCAAAAGGTGTCCTGTCGAGAAACAGGTTGTCATATGGTACGACGAGTGCATGGTACGCTACTCTAACCAGTCATTTCGTTCTACCGAGGCGCAGTCACCTGGGCTGTTCATGAGCAACATAGCGAATGTGACGCAAGTTGGGGATAATAGAACAACCCTATTTAACCAGGTTCTAGCAAATACCATGAATGGGCTAGTCCTTAAGGTCCTCAACACCTCTGATAAGTTTGCAACCCAAGAAGCAAATTATACAGTGTTTACTACGCTGTACACCCTCGGACAGTGCACGCAGGATCTGTCCACCAAATATTGCAGTGGGTGTCTTACAGAAGCCATAGCACAACTTCCAGTTTGTTGTAGTGGAAAACTAGGGGGAAGAGTTCTGTATCCAAGTTGTAATATTAGGTACGAGGTGTACCCCTTCTATTCATCACAGGCGCTTAGAACGGGCAACGTTCAAGCTGCCACACCTCCACCAGCGCCATCGCCACCATCACTGCTTCTTCCTCCCCCTCCTCCAGGAAACGACAAAATCTCATCCTTGATCATAGTGGCCATTGTTGTTCCAATTGCCTTGGTGCTTTTCTTGGTAGGCTGCTTTTTTCTAAGAAGAAAGACAAGAAAAAAATATGATGCTTTACAGGGACAGAATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

314

Amino Acids

34.27

Weight (kDa)

7.9

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	29 - 120	3.3e-22	Salt stress response/antifungal
Stress-antifung	PF01657	147 - 235	4.4e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	1 cut(s)	275
AciI	CCGC	3 cut(s)	229, 273, 275
AclI	AACGTT	1 cut(s)	744
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	843
AfaI	GTAC	5 cut(s)	329, 345, 560, 698, 707
AfiI	CCNNNNNNNGG	3 cut(s)	31, 480, 809
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	30, 749
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	3 cut(s)	388, 456, 808
AluBI	AGCT	1 cut(s)	752
AluI	AGCT	1 cut(s)	752
Alw21I	GWGCWC	1 cut(s)	578
Alw26I	GTCTC	3 cut(s)	163, 197, 263
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	214, 276, 843
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	186, 752, 885
AspLEI	GCGC	3 cut(s)	382, 730, 772
AspS9I	GGNCC	2 cut(s)	13, 496
AsuHPI	GGTGA	2 cut(s)	97, 378
AvaII	GGWCC	2 cut(s)	13, 496
BaeGI	GKGCMC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	198, 739, 872
BccI	CCATC	2 cut(s)	781, 790
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	3 cut(s)	390, 458, 810
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	834
BcoDI	GTCTC	3 cut(s)	163, 197, 263
BfaI	CTAG	3 cut(s)	464, 485, 659
BfoI	RGCGCY	2 cut(s)	731, 773
BfrI	CTTAAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	687
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	187, 229, 276, 753, 886
BlsI	GCNGC	5 cut(s)	188, 230, 277, 754, 887
Bme1390I	CCNGG	3 cut(s)	390, 458, 810
Bme18I	GGWCC	2 cut(s)	13, 496
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	13, 496
BmrFI	CCNGG	3 cut(s)	390, 458, 810
BmsI	GCATC	1 cut(s)	913
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	792
BsaI	GGTCTC	2 cut(s)	197, 263
BsaJI	CCNNGG	6 cut(s)	207, 273, 375, 389, 565, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 480, 809
Bse1I	ACTGG	2 cut(s)	358, 638
BseBI	CCWGG	3 cut(s)	390, 458, 810
BseDI	CCNNGG	6 cut(s)	207, 273, 375, 389, 565, 864
BseGI	GGATG	1 cut(s)	827
BseLI	CCNNNNNNNGG	3 cut(s)	31, 480, 809
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	358, 638
BseRI	GAGGAG	1 cut(s)	795
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	198, 739, 872
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	216, 278, 845
BsiHKAI	GWGCWC	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	31, 480, 809
BsmAI	GTCTC	3 cut(s)	163, 197, 263
BsnI	GGCC	3 cut(s)	216, 278, 845
Bso31I	GGTCTC	2 cut(s)	197, 263
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	192, 583, 834
BspACI	CCGC	3 cut(s)	229, 273, 275
BspANI	GGCC	3 cut(s)	216, 278, 845
BspCNI	CTCAG	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	399
BspPI	GGATC	1 cut(s)	591
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	197, 263
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	358, 638
BssECI	CCNNGG	6 cut(s)	207, 273, 375, 389, 565, 864
BssMI	GATC	3 cut(s)	192, 583, 834
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	3 cut(s)	390, 458, 810
Bst4CI	ACNGT	4 cut(s)	100, 208, 544, 573
Bst6I	CTCTTC	3 cut(s)	26, 224, 661
BstAFI	CTTAAG	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	184, 578
BstDEI	CTNAG	3 cut(s)	280, 731, 896
BstDSI	CCRYGG	2 cut(s)	207, 273
BstENI	CCTNNNNNAGG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	827
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	2 cut(s)	731, 773
BstHHI	GCGC	3 cut(s)	382, 730, 772
BstKTI	GATC	3 cut(s)	195, 586, 837
BstMAI	GTCTC	3 cut(s)	163, 197, 263
BstMBI	GATC	3 cut(s)	192, 583, 834
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 345
BstNI	CCWGG	3 cut(s)	390, 458, 810
BstSCI	CCNGG	3 cut(s)	388, 456, 808
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	198, 739, 872
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	192, 583
BstYI	RGATCY	2 cut(s)	192, 583
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	216, 278, 845
BtgI	CCRYGG	2 cut(s)	207, 273
BtgZI	GCGATG	1 cut(s)	759
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	827
BtsI	GCAGTG	4 cut(s)	177, 238, 610, 785
BtsIMutI	CAGTG	6 cut(s)	177, 238, 549, 578, 610, 785
Cac8I	GCNNGC	2 cut(s)	184, 578
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	3 cut(s)	382, 730, 772
Cfr13I	GGNCC	2 cut(s)	13, 496
Cfr42I	CCGCGG	1 cut(s)	276
CseI	GACGC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	5 cut(s)	328, 344, 559, 697, 706
CviAII	CATG	4 cut(s)	80, 340, 400, 475
CviQI	GTAC	5 cut(s)	328, 344, 559, 697, 706
DdeI	CTNAG	3 cut(s)	280, 731, 896
DpnI	GATC	3 cut(s)	194, 585, 836
DpnII	GATC	3 cut(s)	192, 583, 834
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	3 cut(s)	26, 224, 661
EarI	CTCTTC	3 cut(s)	26, 224, 661
Eco130I	CCWWGG	1 cut(s)	864
Eco31I	GGTCTC	2 cut(s)	197, 263
Eco47I	GGWCC	2 cut(s)	13, 496
EcoNI	CCTNNNNNAGG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	388, 456, 808
EcoT14I	CCWWGG	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	4 cut(s)	83, 343, 403, 478
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	4 cut(s)	79, 339, 399, 474
FauNDI	CATATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	834
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	187, 229, 276, 753, 886
FokI	GGATG	1 cut(s)	814
Fsp4HI	GCNGC	5 cut(s)	187, 229, 276, 753, 886
FspBI	CTAG	3 cut(s)	464, 485, 659
GlaI	GCGC	3 cut(s)	381, 729, 771
GluI	GCNGC	5 cut(s)	187, 229, 276, 753, 886
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	2 cut(s)	731, 773
HaeIII	GGCC	3 cut(s)	216, 278, 845
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	3 cut(s)	382, 730, 772
Hin1II	CATG	4 cut(s)	83, 343, 403, 478
Hin6I	GCGC	3 cut(s)	380, 728, 770
HinP1I	GCGC	3 cut(s)	380, 728, 770
HphI	GGTGA	2 cut(s)	97, 378
Hpy166II	GTNNAC	8 cut(s)	150, 211, 243, 549, 561, 576, 591, 706
Hpy188I	TCNGA	3 cut(s)	283, 511, 569
Hpy188III	TCNNGA	2 cut(s)	307, 400
Hpy8I	GTNNAC	8 cut(s)	150, 211, 243, 549, 561, 576, 591, 706
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	26, 130, 721
HpyCH4III	ACNGT	4 cut(s)	100, 208, 544, 573
HpyCH4IV	ACGT	3 cut(s)	237, 249, 744
HpyCH4V	TGCA	5 cut(s)	255, 339, 521, 576, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 345
HpyF3I	CTNAG	3 cut(s)	280, 731, 896
HpySE526I	ACGT	3 cut(s)	237, 249, 744
Hsp92II	CATG	4 cut(s)	83, 343, 403, 478
HspAI	GCGC	3 cut(s)	380, 728, 770
Ksp22I	TGATCA	1 cut(s)	834
KspI	CCGCGG	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	192, 583, 834
Lsp1109I	GCAGC	3 cut(s)	198, 739, 872
LweI	GCATC	1 cut(s)	913
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	3 cut(s)	464, 485, 659
MaeII	ACGT	3 cut(s)	237, 249, 744
MaeIII	GTNAC	3 cut(s)	233, 384, 418
MalI	GATC	3 cut(s)	194, 585, 836
MboI	GATC	3 cut(s)	192, 583, 834
MboII	GAAGA	6 cut(s)	13, 94, 211, 678, 785, 912
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	2 cut(s)	192, 583
MhlI	GDGCHC	1 cut(s)	578
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	3 cut(s)	140, 535, 858
MluNI	TGGCCA	1 cut(s)	845
Mox20I	TGGCCA	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	2 cut(s)	453, 492
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	3 cut(s)	390, 458, 810
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	3 cut(s)	390, 458, 810
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	261, 345
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	3 cut(s)	192, 583, 834
NlaIII	CATG	4 cut(s)	83, 343, 403, 478
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	3 cut(s)	233, 384, 418
PagI	TCATGA	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	5 cut(s)	188, 230, 277, 754, 887
PpuMI	RGGWCCY	1 cut(s)	496
Psp1406I	AACGTT	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	3 cut(s)	388, 456, 808
PspGI	CCWGG	3 cut(s)	388, 456, 808
PspPI	GGNCC	2 cut(s)	13, 496
PspPPI	RGGWCCY	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	192, 583
RsaI	GTAC	5 cut(s)	329, 345, 560, 698, 707
RsaNI	GTAC	5 cut(s)	328, 344, 559, 697, 706
SacII	CCGCGG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	453, 492
SatI	GCNGC	5 cut(s)	187, 229, 276, 753, 886
Sau3AI	GATC	3 cut(s)	192, 583, 834
Sau96I	GGNCC	2 cut(s)	13, 496
ScrFI	CCNGG	3 cut(s)	390, 458, 810
SduI	GDGCHC	1 cut(s)	578
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	913
Sfr303I	CCGCGG	1 cut(s)	276
SgrBI	CCGCGG	1 cut(s)	276
SinI	GGWCC	2 cut(s)	13, 496
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	140, 535, 858
SsiI	CCGC	3 cut(s)	229, 273, 275
SspI	AATATT	2 cut(s)	599, 691
SspMI	CTAG	3 cut(s)	464, 485, 659
StyD4I	CCNGG	3 cut(s)	388, 456, 808
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	4 cut(s)	100, 208, 544, 573
TaiI	ACGT	3 cut(s)	240, 252, 747
TaqI	TCGA	1 cut(s)	306
TasI	AATT	3 cut(s)	140, 535, 858
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	2 cut(s)	231, 278
Tru1I	TTAA	2 cut(s)	453, 492
Tru9I	TTAA	2 cut(s)	453, 492
TscAI	CASTG	6 cut(s)	184, 238, 549, 578, 610, 792
TseFI	GTSAC	3 cut(s)	233, 384, 418
TseI	GCWGC	3 cut(s)	186, 752, 885
Tsp45I	GTSAC	3 cut(s)	233, 384, 418
TspDTI	ATGAA	3 cut(s)	388, 491, 708
TspRI	CASTG	6 cut(s)	184, 238, 549, 578, 610, 792
Vha464I	CTTAAG	1 cut(s)	491
VneI	GTGCAC	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	13, 496
XagI	CCTNNNNNAGG	1 cut(s)	807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	3 cut(s)	464, 485, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.