RchiOBHm_Chr7g0215811

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000699
Physical Location & Seq
Reverse (-)
33479086 .. 33480707
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19308

Sequence Viewer

Length: 1011 bp
ATGACAACTGTTGAATCCTTGCAATTTGACTTGGGAACTGTCGAAGCTGCCACAAAAAAGTTTTCTACGGATAACATGTTAGGTGAAGGCGGATTTGGTCAAGTTTTCAAGGGAACACTTGATAATGGACTAGAAATAGCTGTGAAGAGGCTGTCAAAAAGCTCTGGACAAGGTGTACGAGAGTTTAAGAACGAGGTTTTATTGGTAGCAAAGCTTCAACACAGGAATCTCGTAAAGCTTCTAGGGTTTTGCTTGGAAGGAGAAGAAACACTACTTGTCTATGAATATGTGCCCAACAAAAGTCTTGATTATTTTCTATTTGAACAACTGGATTGGTCAAGACGCTGCACCATAATAGGAGGAATCGCTCGAGGAATCCTCTATCTTCATGAAGATTCTAGGCTTCGAGTTATACATCGTGATTTGAAAGCTAGCAATATCTTGTTGGATGCTAATATGAATCCAAAAATTTCAGATTTTGGAATGGCAAGAATGTTTGGAGTTGATGATCAAACGCAAGGAAACACACGGAGAATTGTCGGTACTTATGGTTACATGGCTCCAGAATATGCTATGGAGGGATTGTATTCAGTAAAATCTGATGTCTTCAGCTTCGGAATACTCTTGCTTGAGATCCTAACGGGAAGAAAGAACATTTTAGGCTTTCATCCCACAAATTCTGCACCAACTCTTCTCAGTTTTACTTGGCAATTATGGAATGAAGGGAAAGTGTTGGAGTTGATGGATCCAATGCTGAAAGATTCATGCAATCCAAATGAGTTCTTGAGATGCATCCGCATTGGATTATTGTGTGTTCAAGAGGACGCAAATAATAGGCCAACCATGTCATCGGTTGTTCTAATGTTAAAGAGTGAAAGTATCAGCCTTTCCAAGCCTGAGCGACCTGCCTTCTTTACAGGAAGATCTATCAATGATCACTGCCATACATTAGGGGATTTACCTAGTTGCTCTGTCAATGCTTTGACGATTTCTGATGATATCCCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

336

Amino Acids

37.62

Weight (kDa)

5.93

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 22 - 223 5.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 23 - 287 4.8e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 913
AciI CCGC 2 cut(s) 90, 796
AclWI GGATC 3 cut(s) 628, 740, 753
AcsI RAATTY 2 cut(s) 468, 676
AcuI CTGAAG 1 cut(s) 592
AfaI GTAC 2 cut(s) 177, 544
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 6 cut(s) 14, 109, 218, 323, 427, 818
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 7 cut(s) 47, 140, 162, 214, 238, 431, 612
AluI AGCT 7 cut(s) 47, 140, 162, 214, 238, 431, 612
AlwI GGATC 3 cut(s) 628, 740, 753
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 2 cut(s) 47, 345
ApoI RAATTY 2 cut(s) 468, 676
AsuHPI GGTGA 1 cut(s) 95
AsuNHI GCTAGC 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 294
BamHI GGATCC 1 cut(s) 745
BarI GAAGNNNNNNTAC 4 cut(s) 198, 230, 255, 287
BbsI GAAGAC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 34, 332
BccI CCATC 1 cut(s) 736
BclI TGATCA 2 cut(s) 508, 934
BfaI CTAG 5 cut(s) 131, 242, 399, 432, 963
BfuAI ACCTGC 1 cut(s) 913
BglII AGATCT 1 cut(s) 923
BisI GCNGC 2 cut(s) 48, 346
BlsI GCNGC 2 cut(s) 49, 347
BmeT110I CYCGRG 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 561, 747
BmsI GCATC 3 cut(s) 439, 779, 801
BmtI GCTAGC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 598
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 650, 805
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bse1I ACTGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 454, 667, 792
BseMII CTCAG 2 cut(s) 709, 888
BseNI ACTGG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 2 cut(s) 34, 332
BsgI GTGCAG 2 cut(s) 331, 666
BshFI GGCC 1 cut(s) 838
BsiHKCI CYCGRG 1 cut(s) 369
BsnI GGCC 1 cut(s) 838
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 5 cut(s) 508, 633, 745, 923, 934
BspACI CCGC 2 cut(s) 90, 796
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 2 cut(s) 708, 889
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 561, 747
BspMI ACCTGC 1 cut(s) 913
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 3 cut(s) 628, 740, 753
BsrI ACTGG 1 cut(s) 333
BssMI GATC 5 cut(s) 508, 633, 745, 923, 934
Bst4CI ACNGT 2 cut(s) 10, 40
Bst6I CTCTTC 2 cut(s) 140, 696
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 695, 897
BstF5I GGATG 3 cut(s) 454, 667, 792
BstKTI GATC 5 cut(s) 511, 636, 748, 926, 937
BstMBI GATC 5 cut(s) 508, 633, 745, 923, 934
BstNSI RCATGY 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 34, 332
BstV2I GAAGAC 1 cut(s) 598
BstX2I RGATCY 3 cut(s) 633, 745, 923
BstYI RGATCY 3 cut(s) 633, 745, 923
BsuRI GGCC 1 cut(s) 838
BtsCI GGATG 3 cut(s) 454, 667, 792
BtsI GCAGTG 1 cut(s) 937
BtsIMutI CAGTG 1 cut(s) 937
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 388
CseI GACGC 2 cut(s) 351, 833
Csp6I GTAC 2 cut(s) 176, 543
CviAII CATG 5 cut(s) 76, 389, 556, 765, 844
CviQI GTAC 2 cut(s) 176, 543
DdeI CTNAG 2 cut(s) 695, 897
DpnI GATC 5 cut(s) 510, 635, 747, 925, 936
DpnII GATC 5 cut(s) 508, 633, 745, 923, 934
Eam1104I CTCTTC 2 cut(s) 140, 696
EarI CTCTTC 2 cut(s) 140, 696
EciI GGCGGA 1 cut(s) 105
Eco32I GATATC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 1000
EcoT22I ATGCAT 1 cut(s) 794
FaeI CATG 5 cut(s) 79, 392, 559, 768, 847
FatI CATG 5 cut(s) 75, 388, 555, 764, 843
FbaI TGATCA 2 cut(s) 508, 934
Fnu4HI GCNGC 2 cut(s) 48, 346
FokI GGATG 3 cut(s) 461, 654, 779
Fsp4HI GCNGC 2 cut(s) 48, 346
FspBI CTAG 5 cut(s) 131, 242, 399, 432, 963
GluI GCNGC 2 cut(s) 48, 346
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 838
HgaI GACGC 2 cut(s) 351, 833
Hin1II CATG 5 cut(s) 79, 392, 559, 768, 847
HindIII AAGCTT 2 cut(s) 212, 236
HinfI GANTC 7 cut(s) 14, 226, 363, 375, 395, 460, 761
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 475, 601, 617, 994
Hpy188III TCNNGA 8 cut(s) 165, 305, 339, 389, 419, 563, 784, 818
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 80, 251, 716, 919
HpyCH4III ACNGT 2 cut(s) 10, 40
HpyCH4V TGCA 5 cut(s) 22, 348, 683, 768, 792
HpyF3I CTNAG 2 cut(s) 695, 897
Hsp92II CATG 5 cut(s) 79, 392, 559, 768, 847
Ksp22I TGATCA 2 cut(s) 508, 934
Kzo9I GATC 5 cut(s) 508, 633, 745, 923, 934
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 7 cut(s) 150, 208, 314, 576, 903, 909, 918
Lsp1109I GCAGC 2 cut(s) 34, 332
LweI GCATC 3 cut(s) 439, 779, 801
MaeI CTAG 5 cut(s) 131, 242, 399, 432, 963
MaeIII GTNAC 1 cut(s) 551
MalI GATC 5 cut(s) 510, 635, 747, 925, 936
MboI GATC 5 cut(s) 508, 633, 745, 923, 934
MboII GAAGA 8 cut(s) 157, 275, 377, 404, 598, 657, 683, 933
MflI RGATCY 3 cut(s) 633, 745, 923
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 5 cut(s) 23, 468, 534, 676, 710
MmeI TCCRAC 2 cut(s) 426, 714
MnlI CCTC 7 cut(s) 141, 187, 353, 365, 389, 571, 814
Mph1103I ATGCAT 1 cut(s) 794
MseI TTAA 2 cut(s) 186, 866
NdeII GATC 5 cut(s) 508, 633, 745, 923, 934
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 5 cut(s) 79, 392, 559, 768, 847
NlaIV GGNNCC 2 cut(s) 561, 747
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 75
PfeI GAWTC 7 cut(s) 14, 226, 363, 375, 395, 460, 761
PkrI GCNGC 2 cut(s) 49, 347
PscI ACATGT 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 561, 747
PspXI VCTCGAGB 1 cut(s) 369
PsuI RGATCY 3 cut(s) 633, 745, 923
RsaI GTAC 2 cut(s) 177, 544
RsaNI GTAC 2 cut(s) 176, 543
SaqAI TTAA 2 cut(s) 186, 866
SatI GCNGC 2 cut(s) 48, 346
Sau3AI GATC 5 cut(s) 508, 633, 745, 923, 934
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 439, 779, 801
Sfr274I CTCGAG 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 369, 629, 784
SmoI CTYRAG 3 cut(s) 369, 629, 784
Sse9I AATT 5 cut(s) 23, 468, 534, 676, 710
SsiI CCGC 2 cut(s) 90, 796
SspMI CTAG 5 cut(s) 131, 242, 399, 432, 963
TaaI ACNGT 2 cut(s) 10, 40
TaqI TCGA 3 cut(s) 42, 370, 406
TasI AATT 5 cut(s) 23, 468, 534, 676, 710
TfiI GAWTC 7 cut(s) 14, 226, 363, 375, 395, 460, 761
Tru1I TTAA 2 cut(s) 186, 866
Tru9I TTAA 2 cut(s) 186, 866
TscAI CASTG 1 cut(s) 944
TseI GCWGC 2 cut(s) 47, 345
TspDTI ATGAA 7 cut(s) 297, 377, 405, 473, 656, 735, 753
TspGWI ACGGA 2 cut(s) 83, 544
TspRI CASTG 1 cut(s) 944
XapI RAATTY 2 cut(s) 468, 676
XceI RCATGY 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 369
XspI CTAG 5 cut(s) 131, 242, 399, 432, 963
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.