Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

634531 .. 638865

Gene Structure 4335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAGCTGCGCAGGAAGCCGAGCTTTTTGAATGAGGATCTGCCGGAGGATAAGAAGCTTGTTCATGCTTGGTCCGTGATTCTATTCATTGATGCTTTGGCTTTTGCAAGAATAGGCCTCGCCAAATTATTGAGTGCTGCTCTTGGTGTTATCTCTCTGGCGCTTGTTGCTTTGGGCTACTTATTCATACGCAGAAGAGTAAAAAAGACAGCGTACAATGCCCAGCCACAACAAAACAGTATTAACATCACCATCGAGGCCTTGCAATTTGACTTGGCAACTATCCAGATTGCGACAAATCAATTTTCTAGCGAAAACAAGTTAGGCCAAGGCGGTTTTGGTGAAGTTTTCAAGGGAATACTTGGTAATGGACAAGAAATAGCTGTGAAGAGGTTGTCAGAATGCTCCGGACAAGGAGTACAAGAGTTTGTGAATGAGGTTGTAATGATAGCAAAGCTTCAACACAGGAATCTCGTAAAGCTTCTAGGGTTTTGCTGGCAAGGAGAAGAAATACTACTTGTCTATGAATACATGCCCAACAAAAGTCTTGATTATTTTCTATTTGATCCAATGAAACGAGAACAATTGGATTGGTTGAGACGTTGCATGATCATTGGAGGAATTGCTCGAGGAATTCTATATCTCCATGAAGATTCCAGGCTTAGAGTTATACATCGTGATTTGAAAGCTAGCAATATTTTGTTAGATGGCAATATGAATCCAAAAGTATCAGATTTTGGGATGGCAAGAATGTTTGGAGTGGATGATCAAACTCAAGGAAACACAAGAAGAATTGTAGGCACTTATGGTTACATGGCTCCGGAATATGCTATAAAGGGATTGTATTCCATAAAATCTGATGTCTTCAGTTTCGGAATACTCTTGCTTGAAATTGTAACGGGACGAAGAAACTTTTTAGGGTTTCATCTCGAAAATTCTGCACCTGCTCTTCTAGAATATGCTTGGCAATTATGGAATGAAGGGAAGTGCATGGAGCTGATGGATCCATTGTTGAAAGCTTCATGCAGTCCAGATGACTTTCTGAGATACATCCAAATTGGGTTATTGTGTTGTCAAGAAGACGCAAACAATAGGCCAACCATGTCATCGGTTGTTCGAATGTTGAAAACTGAAACTATCAAGCTTTCGAAACCTGAACGAGCTGCCTTCTTATTTACAGGAAGACCTACAAATCACCATGATCAAATAGGTGATCAAGGCTGTTCTGCAAATGGTTTGACAATTTCTGATGATGGACCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

421

Amino Acids

47.41

Weight (kDa)

8.51

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	103 - 372	2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	105 - 375	3.9e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	952
Acc16I	TGCGCA	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	952
AccIII	TCCGGA	2 cut(s)	407, 820
AciI	CCGC	1 cut(s)	333
AclWI	GGATC	4 cut(s)	45, 560, 998, 1011
AcsI	RAATTY	2 cut(s)	633, 934
AcuI	CTGAAG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	215, 420
AgsI	TTSAA	7 cut(s)	31, 352, 461, 685, 890, 1015, 1126
AjnI	CCWGG	1 cut(s)	656
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	4 cut(s)	45, 560, 998, 1011
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	2 cut(s)	407, 820
AoxI	GGCC	4 cut(s)	115, 258, 325, 1094
ApeKI	GCWGC	3 cut(s)	7, 137, 1163
ApoI	RAATTY	2 cut(s)	633, 934
AspLEI	GCGC	2 cut(s)	12, 163
AspS9I	GGNCC	2 cut(s)	72, 1256
AsuHPI	GGTGA	4 cut(s)	241, 353, 1187, 1223
AsuII	TTCGAA	2 cut(s)	1117, 1148
AsuNHI	GCTAGC	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	627
AvaII	GGWCC	2 cut(s)	72, 1256
BamHI	GGATCC	1 cut(s)	1003
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BbsI	GAAGAC	3 cut(s)	856, 1086, 1189
BbvI	GCAGC	2 cut(s)	124, 1150
BccI	CCATC	5 cut(s)	260, 701, 736, 994, 1247
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	1 cut(s)	658
BclI	TGATCA	4 cut(s)	609, 766, 1201, 1213
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	4 cut(s)	309, 485, 690, 953
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	952
BisI	GCNGC	3 cut(s)	8, 138, 1164
BlsI	GCNGC	3 cut(s)	9, 139, 1165
Bme1390I	CCNGG	1 cut(s)	658
Bme18I	GGWCC	2 cut(s)	72, 1256
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	2 cut(s)	72, 1256
BmiI	GGNNCC	2 cut(s)	819, 1005
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	693
BpiI	GAAGAC	3 cut(s)	856, 1086, 1189
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu14I	TTCGAA	2 cut(s)	1117, 1148
BpuEI	CTTGAG	1 cut(s)	759
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	407, 820
BseAI	TCCGGA	2 cut(s)	407, 820
BseBI	CCWGG	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	747, 769, 1050
BseMII	CTCAG	1 cut(s)	1034
BseXI	GCAGC	2 cut(s)	124, 1150
BseYI	CCCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	924
BshFI	GGCC	4 cut(s)	117, 260, 327, 1096
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	3 cut(s)	44, 408, 821
BslFI	GGGAC	1 cut(s)	915
BsmAI	GTCTC	1 cut(s)	592
BsmBI	CGTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	4 cut(s)	117, 260, 327, 1096
BsoBI	CYCGRG	1 cut(s)	627
Bsp119I	TTCGAA	2 cut(s)	1117, 1148
Bsp13I	TCCGGA	2 cut(s)	407, 820
Bsp143I	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	4 cut(s)	117, 260, 327, 1096
BspCNI	CTCAG	1 cut(s)	1035
BspEI	TCCGGA	2 cut(s)	407, 820
BspLI	GGNNCC	2 cut(s)	819, 1005
BspMI	ACCTGC	1 cut(s)	952
BspOI	GCTAGC	1 cut(s)	693
BspPI	GGATC	4 cut(s)	45, 560, 998, 1011
BspQI	GCTCTTC	1 cut(s)	954
BspT104I	TTCGAA	2 cut(s)	1117, 1148
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	3 cut(s)	190, 383, 954
BstBI	TTCGAA	2 cut(s)	1117, 1148
BstC8I	GCNNGC	2 cut(s)	497, 691
BstDEI	CTNAG	2 cut(s)	662, 1043
BstF5I	GGATG	3 cut(s)	747, 769, 1050
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	12, 163
BstKTI	GATC	7 cut(s)	40, 568, 612, 769, 1006, 1204, 1216
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 167, 218
BstNI	CCWGG	1 cut(s)	658
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	656
BstV1I	GCAGC	2 cut(s)	124, 1150
BstV2I	GAAGAC	3 cut(s)	856, 1086, 1189
BstX2I	RGATCY	2 cut(s)	37, 1003
BstYI	RGATCY	2 cut(s)	37, 1003
BsuRI	GGCC	4 cut(s)	117, 260, 327, 1096
BtsCI	GGATG	3 cut(s)	747, 769, 1050
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	2 cut(s)	497, 691
CfoI	GCGC	2 cut(s)	12, 163
Cfr13I	GGNCC	2 cut(s)	72, 1256
CseI	GACGC	1 cut(s)	1091
Csp6I	GTAC	2 cut(s)	214, 419
CviAII	CATG	9 cut(s)	65, 532, 607, 647, 814, 991, 1023, 1102, 1199
CviQI	GTAC	2 cut(s)	214, 419
DdeI	CTNAG	2 cut(s)	662, 1043
DpnI	GATC	7 cut(s)	39, 567, 611, 768, 1005, 1203, 1215
DpnII	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
Eam1104I	CTCTTC	3 cut(s)	190, 383, 954
EarI	CTCTTC	3 cut(s)	190, 383, 954
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	2 cut(s)	117, 260
Eco47I	GGWCC	2 cut(s)	72, 1256
Eco57I	CTGAAG	1 cut(s)	850
Eco88I	CYCGRG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	9 cut(s)	68, 535, 610, 650, 817, 994, 1026, 1105, 1202
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	9 cut(s)	64, 531, 606, 646, 813, 990, 1022, 1101, 1198
FbaI	TGATCA	4 cut(s)	609, 766, 1201, 1213
Fnu4HI	GCNGC	3 cut(s)	8, 138, 1164
FokI	GGATG	3 cut(s)	754, 776, 1037
Fsp4HI	GCNGC	3 cut(s)	8, 138, 1164
FspBI	CTAG	4 cut(s)	309, 485, 690, 953
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	2 cut(s)	11, 162
GluI	GCNGC	3 cut(s)	8, 138, 1164
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	117, 260, 327, 1096
HapII	CCGG	3 cut(s)	44, 408, 821
HgaI	GACGC	1 cut(s)	1091
HhaI	GCGC	2 cut(s)	12, 163
Hin1II	CATG	9 cut(s)	68, 535, 610, 650, 817, 994, 1026, 1105, 1202
Hin6I	GCGC	2 cut(s)	10, 161
HinP1I	GCGC	2 cut(s)	10, 161
HindIII	AAGCTT	5 cut(s)	56, 455, 479, 1017, 1142
HinfI	GANTC	4 cut(s)	79, 469, 653, 718
HpaII	CCGG	3 cut(s)	44, 408, 821
HphI	GGTGA	4 cut(s)	241, 353, 1187, 1223
Hpy188I	TCNGA	6 cut(s)	400, 733, 859, 875, 1044, 1249
Hpy188III	TCNNGA	9 cut(s)	286, 408, 548, 677, 821, 929, 953, 1031, 1076
HpyAV	CCTTC	2 cut(s)	974, 1177
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	601, 1261
HpyCH4V	TGCA	7 cut(s)	107, 265, 606, 941, 990, 1026, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 167, 218
HpyF3I	CTNAG	2 cut(s)	662, 1043
HpySE526I	ACGT	2 cut(s)	601, 1261
Hsp92II	CATG	9 cut(s)	68, 535, 610, 650, 817, 994, 1026, 1105, 1202
HspAI	GCGC	2 cut(s)	10, 161
Kpn2I	TCCGGA	2 cut(s)	407, 820
Ksp22I	TGATCA	4 cut(s)	609, 766, 1201, 1213
Kzo9I	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
LguI	GCTCTTC	1 cut(s)	954
LmnI	GCTCC	3 cut(s)	410, 823, 994
Lsp1109I	GCAGC	2 cut(s)	124, 1150
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	4 cut(s)	309, 485, 690, 953
MaeII	ACGT	2 cut(s)	601, 1261
MaeIII	GTNAC	2 cut(s)	809, 895
MalI	GATC	7 cut(s)	39, 567, 611, 768, 1005, 1203, 1215
MboI	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
MfeI	CAATTG	1 cut(s)	584
MflI	RGATCY	2 cut(s)	37, 1003
MnlI	CCTC	8 cut(s)	28, 40, 128, 250, 384, 430, 611, 623
MroI	TCCGGA	2 cut(s)	407, 820
MseI	TTAA	1 cut(s)	243
MspI	CCGG	3 cut(s)	44, 408, 821
MspR9I	CCNGG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	658
MwoI	GCNNNNNNNGC	3 cut(s)	16, 167, 218
NdeII	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	9 cut(s)	68, 535, 610, 650, 817, 994, 1026, 1105, 1202
NlaIV	GGNNCC	2 cut(s)	819, 1005
NmeAIII	GCCGAG	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	535
NspV	TTCGAA	2 cut(s)	1117, 1148
PaeR7I	CTCGAG	1 cut(s)	627
PaqCI	CACCTGC	1 cut(s)	952
PceI	AGGCCT	2 cut(s)	117, 260
PciSI	GCTCTTC	1 cut(s)	954
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	79, 469, 653, 718
PkrI	GCNGC	3 cut(s)	9, 139, 1165
Psp6I	CCWGG	1 cut(s)	656
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	656
PspN4I	GGNNCC	2 cut(s)	819, 1005
PspPI	GGNCC	2 cut(s)	72, 1256
PspXI	VCTCGAGB	1 cut(s)	627
PsuI	RGATCY	2 cut(s)	37, 1003
RsaI	GTAC	2 cut(s)	215, 420
RsaNI	GTAC	2 cut(s)	214, 419
SapI	GCTCTTC	1 cut(s)	954
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	8, 138, 1164
Sau3AI	GATC	7 cut(s)	37, 565, 609, 766, 1003, 1201, 1213
Sau96I	GGNCC	2 cut(s)	72, 1256
ScrFI	CCNGG	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	627
SfuI	TTCGAA	2 cut(s)	1117, 1148
SinI	GGWCC	2 cut(s)	72, 1256
SlaI	CTCGAG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	627, 774
SmoI	CTYRAG	2 cut(s)	627, 774
SseBI	AGGCCT	2 cut(s)	117, 260
SsiI	CCGC	1 cut(s)	333
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	4 cut(s)	309, 485, 690, 953
StuI	AGGCCT	2 cut(s)	117, 260
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	604, 1264
TaqI	TCGA	5 cut(s)	255, 628, 930, 1117, 1148
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	4 cut(s)	79, 469, 653, 718
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	3 cut(s)	7, 137, 1163
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	72, 1256
XapI	RAATTY	2 cut(s)	633, 934
XbaI	TCTAGA	1 cut(s)	952
XceI	RCATGY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	627
XspI	CTAG	4 cut(s)	309, 485, 690, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.