Rh2AG290300

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
35623038 .. 35625268
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG290300.1

Sequence Viewer

Length: 1059 bp
ATGCCTTGTTTTAACTTGCAATATACGCCAATGTCGATCCTCTATTTTCTTTACACGCTGAGCTCGCTTTGCTTGAGCAGTACTGTAGCGTATGGTAAATACCTCCACCATTTCTGCCCAAACACCACCACTTTCACCGCAAAATCCTCCTTCCAACCCCATCGCGATCAACTGCTGCGGACCCTTGTCTCTAACGCCACCCGTGACAATGGCTTTTACTATGCCTCTGCTGGCGGCCAAATCTCAAACGAGACCGTCAACGGACTCTTCCTCTGCCGCGGTGACCTGTCCAAAGATGCTTGCAGTGACTGCGTATTCGCTGTAGCCTCTGATGTTGTGAAACGCTGCCCAATCGAGAAAAAGGCTATTATATGGTATGACTACTGCATGATACGCTACTCTAACTATTCATTCTTTTCTATTGATGAGGACTCGCCTTTCCACTTCAAGTGGAACTGGAACGAGGAGAATGTTAGGCAGGAGGGGGATGCATTTGCAGCATCCTTTAACAACGTAGTGGGACATACTATGAAGCTTTTAGTACAACAGGTTGCCAGCGCCACAAAAAAGTTTGCGATCAAACAATCGTACACCAAACTGTTATTTGGACAGCCGTTCTACAGCCTTGGACAGTGCACGCAGGATCTGTCCACTGCAGATTGCAATAGCTGTCTTACTAGAGCCACAGAAAACCTTCAGAGTATGAATGCTACAGGAAAACAAGGGGCGCTTCTTCTATCACCAAGTTGTAATATGAGGTTCGATTTGGAACCCTTTTACACCGCTCTACCTCCGCCCCCCTTCGTAGTATCCCCTCCTCCGCCACCCTTGGAAGTATCCCCTCCTCCGCCACCCTTGGTAGTATCCCCTCCACCGGCCCCGGTAGCACTGCCAACACTTGGAGGAAAAAGTAAATTCTCATCCAAAGTCATTGTTAGTATTCTTGCTCCTGTTGCTCTTTGTGTGCTGGTTGTGGTTCTGGCCGGATTCTATTTTGGCAAGAGACTCAGAAGAGCAAAACGACAAAAGAACAAAGGTACTTGCAAGAACAAAAAATAA

Protein Analysis

352

Amino Acids

39.01

Weight (kDa)

9.16

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 39 - 136 8.7e-24 Salt stress response/antifungal
Stress-antifung PF01657 161 - 255 7.4e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 899
AccBSI CCGCTC 1 cut(s) 785
AccII CGCG 2 cut(s) 165, 279
AciI CCGC 9 cut(s) 138, 178, 234, 277, 279, 783, 794, 821, 848
AclWI GGATC 2 cut(s) 31, 651
AcoI YGGCCR 2 cut(s) 235, 981
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 1 cut(s) 680
AfaI GTAC 4 cut(s) 82, 543, 590, 1039
AfiI CCNNNNNNNGG 2 cut(s) 874, 899
AgsI TTSAA 1 cut(s) 448
AluBI AGCT 3 cut(s) 63, 535, 669
AluI AGCT 3 cut(s) 63, 535, 669
Alw21I GWGCWC 2 cut(s) 65, 638
Alw26I GTCTC 3 cut(s) 193, 245, 997
Alw44I GTGCAC 1 cut(s) 634
AlwI GGATC 2 cut(s) 31, 651
AlwNI CAGNNNCTG 2 cut(s) 309, 646
AoxI GGCC 3 cut(s) 235, 876, 981
ApaLI GTGCAC 1 cut(s) 634
ApeKI GCWGC 3 cut(s) 175, 345, 497
ApoI RAATTY 1 cut(s) 914
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 2 cut(s) 560, 730
AspS9I GGNCC 2 cut(s) 180, 877
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 3 cut(s) 127, 293, 732
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 638
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 65, 638
BbvI GCAGC 3 cut(s) 162, 332, 509
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 598
BciVI GTATCC 3 cut(s) 820, 847, 874
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 3 cut(s) 193, 245, 997
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 5 cut(s) 84, 321, 619, 654, 711
BfoI RGCGCY 2 cut(s) 561, 731
BfuI GTATCC 3 cut(s) 820, 847, 874
BisI GCNGC 5 cut(s) 176, 235, 277, 346, 498
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 5 cut(s) 177, 236, 278, 347, 499
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 881
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 2 cut(s) 180, 877
BmiI GGNNCC 3 cut(s) 182, 771, 879
BmrFI CCNGG 1 cut(s) 881
BmsI GCATC 3 cut(s) 286, 478, 509
BoxI GACNNNNGTC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 881
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 5 cut(s) 277, 625, 828, 855, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 874, 899
Bse118I RCCGGY 1 cut(s) 874
Bse1I ACTGG 1 cut(s) 461
BseDI CCNNGG 5 cut(s) 277, 625, 828, 855, 879
BseGI GGATG 3 cut(s) 493, 500, 920
BseLI CCNNNNNNNGG 2 cut(s) 874, 899
BseMII CTCAG 2 cut(s) 50, 1021
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 3 cut(s) 479, 807, 834
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 162, 332, 509
Bsh1236I CGCG 2 cut(s) 165, 279
BshFI GGCC 3 cut(s) 237, 878, 983
BsiHKAI GWGCWC 2 cut(s) 65, 638
BsiSI CCGG 3 cut(s) 875, 881, 984
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 874, 899
BsmAI GTCTC 3 cut(s) 193, 245, 997
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 3 cut(s) 237, 878, 983
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 65, 638
Bsp143I GATC 4 cut(s) 36, 166, 576, 643
Bsp1720I GCTNAGC 1 cut(s) 59
Bsp68I TCGCGA 1 cut(s) 165
BspACI CCGC 9 cut(s) 138, 178, 234, 277, 279, 783, 794, 821, 848
BspANI GGCC 3 cut(s) 237, 878, 983
BspCNI CTCAG 2 cut(s) 51, 1020
BspFNI CGCG 2 cut(s) 165, 279
BspLI GGNNCC 3 cut(s) 182, 771, 879
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 2 cut(s) 31, 651
BspQI GCTCTTC 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 785
BsrFI RCCGGY 1 cut(s) 874
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 874
BssECI CCNNGG 5 cut(s) 277, 625, 828, 855, 879
BssMI GATC 4 cut(s) 36, 166, 576, 643
BssT1I CCWWGG 3 cut(s) 625, 828, 855
Bst4CI ACNGT 4 cut(s) 85, 256, 600, 633
Bst6I CTCTTC 2 cut(s) 272, 1006
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 65, 232, 301, 556, 638
BstDEI CTNAG 2 cut(s) 59, 1007
BstDSI CCRYGG 1 cut(s) 277
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 3 cut(s) 493, 500, 920
BstFNI CGCG 2 cut(s) 165, 279
BstH2I RGCGCY 2 cut(s) 561, 731
BstHHI GCGC 2 cut(s) 560, 730
BstKTI GATC 4 cut(s) 39, 169, 579, 646
BstMAI GTCTC 3 cut(s) 193, 245, 997
BstMBI GATC 4 cut(s) 36, 166, 576, 643
BstMWI GCNNNNNNNGC 8 cut(s) 25, 64, 69, 309, 393, 497, 884, 953
BstPAI GACNNNNGTC 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 879
BstSFI CTRYAG 5 cut(s) 84, 321, 619, 654, 711
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 2 cut(s) 165, 279
BstV1I GCAGC 3 cut(s) 162, 332, 509
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 3 cut(s) 820, 847, 874
BsuRI GGCC 3 cut(s) 237, 878, 983
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 3 cut(s) 493, 500, 920
BtsI GCAGTG 3 cut(s) 310, 651, 887
BtsIMutI CAGTG 4 cut(s) 310, 638, 651, 887
BtuMI TCGCGA 1 cut(s) 165
Cac8I GCNNGC 5 cut(s) 65, 232, 301, 556, 638
CaiI CAGNNNCTG 2 cut(s) 309, 646
CfoI GCGC 2 cut(s) 560, 730
Cfr10I RCCGGY 1 cut(s) 874
Cfr13I GGNCC 2 cut(s) 180, 877
Cfr42I CCGCGG 1 cut(s) 280
Csp6I GTAC 4 cut(s) 81, 542, 589, 1038
CviAII CATG 1 cut(s) 388
CviQI GTAC 4 cut(s) 81, 542, 589, 1038
DdeI CTNAG 2 cut(s) 59, 1007
DpnI GATC 4 cut(s) 38, 168, 578, 645
DpnII GATC 4 cut(s) 36, 166, 576, 643
EaeI YGGCCR 2 cut(s) 235, 981
Eam1104I CTCTTC 2 cut(s) 272, 1006
EarI CTCTTC 2 cut(s) 272, 1006
EciI GGCGGA 3 cut(s) 783, 810, 837
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 3 cut(s) 625, 828, 855
Eco24I GRGCYC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 680
Eco91I GGTNACC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 281
EcoT14I CCWWGG 3 cut(s) 625, 828, 855
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 3 cut(s) 625, 828, 855
FaeI CATG 1 cut(s) 391
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 1 cut(s) 534
FatI CATG 1 cut(s) 387
Fnu4HI GCNGC 5 cut(s) 176, 235, 277, 346, 498
FokI GGATG 3 cut(s) 487, 500, 907
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 5 cut(s) 176, 235, 277, 346, 498
FspBI CTAG 1 cut(s) 678
GlaI GCGC 2 cut(s) 559, 729
GluI GCNGC 5 cut(s) 176, 235, 277, 346, 498
HaeII RGCGCY 2 cut(s) 561, 731
HaeIII GGCC 3 cut(s) 237, 878, 983
HapII CCGG 3 cut(s) 875, 881, 984
HhaI GCGC 2 cut(s) 560, 730
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 2 cut(s) 558, 728
HinP1I GCGC 2 cut(s) 558, 728
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 264, 431, 987, 1005
HpaII CCGG 3 cut(s) 875, 881, 984
HphI GGTGA 3 cut(s) 127, 293, 732
Hpy166II GTNNAC 4 cut(s) 259, 591, 636, 651
Hpy188I TCNGA 3 cut(s) 331, 699, 1010
Hpy188III TCNNGA 2 cut(s) 164, 355
Hpy8I GTNNAC 4 cut(s) 259, 591, 636, 651
HpyAV CCTTC 3 cut(s) 160, 704, 811
HpyCH4III ACNGT 4 cut(s) 85, 256, 600, 633
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 9 cut(s) 19, 303, 387, 491, 497, 636, 656, 663, 1044
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 64, 69, 309, 393, 497, 884, 953
HpyF3I CTNAG 2 cut(s) 59, 1007
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 2 cut(s) 558, 728
KspI CCGCGG 1 cut(s) 280
Kzo9I GATC 4 cut(s) 36, 166, 576, 643
LguI GCTCTTC 1 cut(s) 1006
LmnI GCTCC 1 cut(s) 952
Lsp1109I GCAGC 3 cut(s) 162, 332, 509
LweI GCATC 3 cut(s) 286, 478, 509
MaeI CTAG 1 cut(s) 678
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 3 cut(s) 203, 281, 305
MalI GATC 4 cut(s) 38, 168, 578, 645
MbiI CCGCTC 1 cut(s) 785
MboI GATC 4 cut(s) 36, 166, 576, 643
MboII GAAGA 3 cut(s) 259, 725, 1023
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 65, 638
MluCI AATT 1 cut(s) 914
MlyI GAGTC 3 cut(s) 258, 425, 999
MmeI TCCRAC 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 2 cut(s) 12, 507
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 3 cut(s) 875, 881, 984
MspR9I CCNGG 1 cut(s) 881
Mva1269I GAATGC 1 cut(s) 712
MvnI CGCG 2 cut(s) 165, 279
MwoI GCNNNNNNNGC 8 cut(s) 25, 64, 69, 309, 393, 497, 884, 953
NciI CCSGG 1 cut(s) 881
NdeII GATC 4 cut(s) 36, 166, 576, 643
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 3 cut(s) 182, 771, 879
NmuCI GTSAC 3 cut(s) 203, 281, 305
NruI TCGCGA 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 987
PflMI CCANNNNNTGG 1 cut(s) 899
PkrI GCNGC 5 cut(s) 177, 236, 278, 347, 499
PleI GAGTC 3 cut(s) 258, 425, 999
PpsI GAGTC 3 cut(s) 258, 425, 999
PshAI GACNNNNGTC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 281
PspN4I GGNNCC 3 cut(s) 182, 771, 879
PspPI GGNCC 2 cut(s) 180, 877
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 2 cut(s) 309, 646
PsuI RGATCY 1 cut(s) 643
RruI TCGCGA 1 cut(s) 165
RsaI GTAC 4 cut(s) 82, 543, 590, 1039
RsaNI GTAC 4 cut(s) 81, 542, 589, 1038
SacI GAGCTC 1 cut(s) 65
SacII CCGCGG 1 cut(s) 280
SapI GCTCTTC 1 cut(s) 1006
SaqAI TTAA 2 cut(s) 12, 507
SatI GCNGC 5 cut(s) 176, 235, 277, 346, 498
Sau3AI GATC 4 cut(s) 36, 166, 576, 643
Sau96I GGNCC 2 cut(s) 180, 877
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 3 cut(s) 258, 425, 999
ScrFI CCNGG 1 cut(s) 881
SduI GDGCHC 2 cut(s) 65, 638
SfaNI GCATC 3 cut(s) 286, 478, 509
SfcI CTRYAG 5 cut(s) 84, 321, 619, 654, 711
Sfr303I CCGCGG 1 cut(s) 280
SgrBI CCGCGG 1 cut(s) 280
SinI GGWCC 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 914
SsiI CCGC 9 cut(s) 138, 178, 234, 277, 279, 783, 794, 821, 848
SspMI CTAG 1 cut(s) 678
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 879
StyI CCWWGG 3 cut(s) 625, 828, 855
TaaI ACNGT 4 cut(s) 85, 256, 600, 633
TaiI ACGT 1 cut(s) 516
TaqI TCGA 3 cut(s) 35, 354, 762
TasI AATT 1 cut(s) 914
TatI WGTACW 2 cut(s) 80, 541
TauI GCSGC 2 cut(s) 237, 279
TfiI GAWTC 1 cut(s) 987
Tru1I TTAA 2 cut(s) 12, 507
Tru9I TTAA 2 cut(s) 12, 507
TscAI CASTG 4 cut(s) 310, 638, 658, 894
TseFI GTSAC 3 cut(s) 203, 281, 305
TseI GCWGC 3 cut(s) 175, 345, 497
Tsp45I GTSAC 3 cut(s) 203, 281, 305
TspDTI ATGAA 3 cut(s) 399, 545, 719
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 310, 638, 658, 894
Van91I CCANNNNNTGG 1 cut(s) 899
VneI GTGCAC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 1 cut(s) 914
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 1 cut(s) 678
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.