Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

34999914 .. 35000747

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCTTGTTTTTCCTCGCAATATACGCTAATATTGATCCTCTATTTTCTTTCGACGCTGAGCTCCCTCTGCTTGTGCATTACTGTAGCATGTGATAATAACTACCTCCAGCATTTCTGCAAAAACGCCACCAGTAACACCGCAAAATCCTTCCAATTCCATCGCGATCAAGTGCTGTCGACCCTTGTCTCTAACGGCACCCGTGACAATAGCTTTTATAATGCCACTGCTGGTGGACAAATATCAGACGAGACTGTCTACGGACTCTTCCTCTGCTGCGGTGATCTATCCAAAGATGCTTGCAGTGAGTGCGTAGCTGCTGTAGCCTCGGATGTTGTTGAACGCTGCCCAATCGGGAAAGAGGTGGTTATATGGTATGACTACTGCATGATACGCTACTCTGACTATTCATTCTTTTCTATTGATGAGGAGTCGCCTTGGGTGTTAATGTGGAACAAGGAGAATGTTACGCAGGAAGGGGATGCATTTGTAGCATCCTTTAACTACGTAGTGGGACTTACTATGAATAGGTTAGTACAAAAGGTTACCAGCGCCACAAAAAAGTTTGCGACCCAAGAATCGAACATCACAGCGTCAAATGGAAAGCTGATGTACAGCCTTGGACAGTGCAGGCAGGATCTGTCCACTGCAGATTGCAATAGATGTCTTGGTAGAGTCATAGCAAACCTTCCAAATATTGTTACAGGCAAAACAGGGGGGCGTTATCTATCATCAAGTTGTAATTTTAGGTTCGATTTGGCACCCTTTTACACATTACAGGCGCCAGTAGAAGAGGCTCTACCTCTTCCGCGAACACTTGAAGGTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

277

Amino Acids

30.79

Weight (kDa)

5.49

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	40 - 136	1.2e-21	Salt stress response/antifungal
Stress-antifung	PF01657	167 - 252	1.1e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AasI	GACNNNNNNGTC	1 cut(s)	254
AccB1I	GGYRCC	3 cut(s)	197, 760, 781
AccI	GTMKAC	2 cut(s)	179, 258
AccII	CGCG	2 cut(s)	165, 811
AciI	CCGC	3 cut(s)	141, 279, 809
AclWI	GGATC	2 cut(s)	31, 645
AcyI	GRCGYC	1 cut(s)	782
AfaI	GTAC	2 cut(s)	537, 614
AgsI	TTSAA	2 cut(s)	341, 821
AluBI	AGCT	4 cut(s)	63, 213, 317, 607
AluI	AGCT	4 cut(s)	63, 213, 317, 607
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	193, 245
AlwI	GGATC	2 cut(s)	31, 645
AlwNI	CAGNNNCTG	1 cut(s)	640
ApeKI	GCWGC	3 cut(s)	276, 317, 345
AspLEI	GCGC	2 cut(s)	554, 784
AsuHPI	GGTGA	1 cut(s)	293
BanI	GGYRCC	3 cut(s)	197, 760, 781
BanII	GRGCYC	1 cut(s)	65
BarI	GAAGNNNNNNTAC	2 cut(s)	783, 815
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	263, 304, 332
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	193, 245
BfmI	CTRYAG	3 cut(s)	84, 321, 648
BfoI	RGCGCY	2 cut(s)	555, 785
BisI	GCNGC	3 cut(s)	277, 318, 346
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	278, 319, 347
BmiI	GGNNCC	3 cut(s)	199, 762, 783
BmsI	GCATC	3 cut(s)	286, 472, 503
BoxI	GACNNNNGTC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	327, 437, 619
Bse1I	ACTGG	2 cut(s)	132, 785
BseDI	CCNNGG	3 cut(s)	327, 437, 619
BseGI	GGATG	3 cut(s)	337, 487, 494
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	132, 785
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	263, 304, 332
BsgI	GTGCAG	1 cut(s)	649
Bsh1236I	CGCG	2 cut(s)	165, 811
BshNI	GGYRCC	3 cut(s)	197, 760, 781
BsiHKAI	GWGCWC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	193, 245
BsmFI	GGGAC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	36, 166, 283, 637
Bsp1720I	GCTNAGC	1 cut(s)	59
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	3 cut(s)	141, 279, 809
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	2 cut(s)	165, 811
BspLI	GGNNCC	3 cut(s)	199, 762, 783
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	2 cut(s)	31, 645
BspT107I	GGYRCC	3 cut(s)	197, 760, 781
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	132, 785
BssECI	CCNNGG	3 cut(s)	327, 437, 619
BssMI	GATC	4 cut(s)	36, 166, 283, 637
BssNI	GRCGYC	1 cut(s)	782
BssT1I	CCWWGG	2 cut(s)	437, 619
Bst4CI	ACNGT	3 cut(s)	85, 256, 627
Bst6I	CTCTTC	3 cut(s)	272, 786, 810
BstACI	GRCGYC	1 cut(s)	782
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	612
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	301, 632
BstDEI	CTNAG	1 cut(s)	59
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	337, 487, 494
BstFNI	CGCG	2 cut(s)	165, 811
BstH2I	RGCGCY	2 cut(s)	555, 785
BstHHI	GCGC	2 cut(s)	554, 784
BstKTI	GATC	4 cut(s)	39, 169, 286, 640
BstMAI	GTCTC	2 cut(s)	193, 245
BstMBI	GATC	4 cut(s)	36, 166, 283, 637
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 69, 309, 323, 393, 491
BstNSI	RCATGY	1 cut(s)	93
BstPAI	GACNNNNGTC	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	544
BstSFI	CTRYAG	3 cut(s)	84, 321, 648
BstSNI	TACGTA	1 cut(s)	508
BstUI	CGCG	2 cut(s)	165, 811
BstV1I	GCAGC	3 cut(s)	263, 304, 332
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	337, 487, 494
BtsI	GCAGTG	3 cut(s)	225, 310, 645
BtsIMutI	CAGTG	4 cut(s)	225, 310, 632, 645
BtuMI	TCGCGA	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	301, 632
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	2 cut(s)	554, 784
CseI	GACGC	2 cut(s)	64, 582
Csp6I	GTAC	2 cut(s)	536, 613
CviAII	CATG	2 cut(s)	90, 388
CviJI	RGCY	7 cut(s)	63, 213, 317, 326, 607, 618, 797
CviKI_1	RGCY	7 cut(s)	63, 213, 317, 326, 607, 618, 797
CviQI	GTAC	2 cut(s)	536, 613
DdeI	CTNAG	1 cut(s)	59
DinI	GGCGCC	1 cut(s)	783
DpnI	GATC	4 cut(s)	38, 168, 285, 639
DpnII	GATC	4 cut(s)	36, 166, 283, 637
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	3 cut(s)	272, 786, 810
EarI	CTCTTC	3 cut(s)	272, 786, 810
Ecl136II	GAGCTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	437, 619
Eco24I	GRGCYC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	437, 619
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	65
EgeI	GGCGCC	1 cut(s)	783
EheI	GGCGCC	1 cut(s)	783
ErhI	CCWWGG	2 cut(s)	437, 619
FaeI	CATG	2 cut(s)	93, 391
FaiI	YATR	9 cut(s)	24, 91, 219, 371, 373, 378, 389, 524, 680
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	2 cut(s)	89, 387
FblI	GTMKAC	2 cut(s)	179, 258
Fnu4HI	GCNGC	3 cut(s)	277, 318, 346
FokI	GGATG	3 cut(s)	344, 481, 494
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	277, 318, 346
GlaI	GCGC	2 cut(s)	553, 783
GluI	GCNGC	3 cut(s)	277, 318, 346
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	2 cut(s)	555, 785
HgaI	GACGC	2 cut(s)	64, 582
HhaI	GCGC	2 cut(s)	554, 784
Hin1I	GRCGYC	1 cut(s)	782
Hin1II	CATG	2 cut(s)	93, 391
Hin6I	GCGC	2 cut(s)	552, 782
HinP1I	GCGC	2 cut(s)	552, 782
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	264, 431, 578, 675
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	4 cut(s)	180, 236, 259, 645
Hpy188I	TCNGA	3 cut(s)	247, 331, 403
Hpy188III	TCNNGA	2 cut(s)	164, 355
Hpy8I	GTNNAC	4 cut(s)	180, 236, 259, 645
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	160, 470, 698, 815
HpyCH4III	ACNGT	3 cut(s)	85, 256, 627
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	8 cut(s)	78, 120, 303, 387, 485, 630, 650, 657
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 69, 309, 323, 393, 491
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	782
Hsp92II	CATG	2 cut(s)	93, 391
HspAI	GCGC	2 cut(s)	552, 782
KasI	GGCGCC	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	36, 166, 283, 637
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	3 cut(s)	263, 304, 332
LweI	GCATC	3 cut(s)	286, 472, 503
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	5 cut(s)	134, 203, 466, 544, 700
MalI	GATC	4 cut(s)	38, 168, 285, 639
MboI	GATC	4 cut(s)	36, 166, 283, 637
MboII	GAAGA	3 cut(s)	259, 797, 803
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	155, 742
Mly113I	GGCGCC	1 cut(s)	782
MlyI	GAGTC	3 cut(s)	258, 440, 684
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	2 cut(s)	446, 501
MvnI	CGCG	2 cut(s)	165, 811
MwoI	GCNNNNNNNGC	6 cut(s)	25, 69, 309, 323, 393, 491
NarI	GGCGCC	1 cut(s)	782
NdeII	GATC	4 cut(s)	36, 166, 283, 637
NlaIII	CATG	2 cut(s)	93, 391
NlaIV	GGNNCC	3 cut(s)	199, 762, 783
NmuCI	GTSAC	1 cut(s)	203
NruI	TCGCGA	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	3 cut(s)	278, 319, 347
PleI	GAGTC	3 cut(s)	258, 439, 683
PluTI	GGCGCC	1 cut(s)	785
PpsI	GAGTC	3 cut(s)	258, 439, 683
Ppu21I	YACGTR	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	199, 762, 783
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	637
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	2 cut(s)	537, 614
RsaNI	GTAC	2 cut(s)	536, 613
SacI	GAGCTC	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	446, 501
SatI	GCNGC	3 cut(s)	277, 318, 346
Sau3AI	GATC	4 cut(s)	36, 166, 283, 637
SchI	GAGTC	3 cut(s)	258, 440, 684
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	3 cut(s)	286, 472, 503
SfcI	CTRYAG	3 cut(s)	84, 321, 648
SfoI	GGCGCC	1 cut(s)	783
SnaBI	TACGTA	1 cut(s)	508
Sse9I	AATT	2 cut(s)	155, 742
SsiI	CCGC	3 cut(s)	141, 279, 809
SspDI	GGCGCC	1 cut(s)	781
SspI	AATATT	2 cut(s)	33, 697
SstI	GAGCTC	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	437, 619
TaaI	ACNGT	3 cut(s)	85, 256, 627
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	4 cut(s)	53, 179, 581, 753
TasI	AATT	2 cut(s)	155, 742
TatI	WGTACW	2 cut(s)	535, 612
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	2 cut(s)	446, 501
Tru9I	TTAA	2 cut(s)	446, 501
TscAI	CASTG	4 cut(s)	232, 310, 632, 652
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	276, 317, 345
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	399, 539
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	4 cut(s)	232, 310, 632, 652
XceI	RCATGY	1 cut(s)	93
XmiI	GTMKAC	2 cut(s)	179, 258
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.