pycom05g30920

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000699
Physical Location & Seq
Reverse (-)
30851174 .. 30852096
923 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30920.3

Sequence Viewer

Length: 657 bp
ATGATAATTGGAGGAATTGCTCGAGGAATTTTGTATCTTCATGAAGATTCGAGGCTTAGAGTTATACATCGTGATTTGAAAGCTAGCAACATTTTATTAGATAGCAACATGAATCCGAAAATATCAGATTTTGGGATGGCTAGAATGTTTGGAGTTGATGATCAAACTGAAGGAAATACCAAAAGAGTTGTCGGTACTTATGGTTACTTGGCTCCAGAATATGCTATGGAAGGGTTGTATTCAGTAAAATCGGATGTCTTCAGCTTCGGAGTACTTCTGCTTGAGATCATAACGGGGAGAAGGAACTTTTTAGGCTTTCATCGCACAAATTGTAAACCTACTCTTATAGGTTATGCTTGGCAATTATGGAATGAAACGAAAGGGTTAGAGTTGATGGATCGATTGTTAAAAGATTCCTGCAGTCCAAATGAATTTTTGAGGTACATCCACATTGGATTATTGTGCGTTCAAGAAGATCCAAACAGCAGGCCGACCATGTCCTCAGTTACTCTTATGTTAAAAACTGAAACTATTAGTCTTTCCAGACCTGAGAAACCAGCCTTCTTTACAGGAGGATATGTTGACCACCATGATCAAGTGCGTCCTCAAGATTGCTCAGACAATGGTTTGACCATTTCTATCGATGTTCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

219

Amino Acids

24.65

Weight (kDa)

6.3

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 405, 470
AcsI RAATTY 2 cut(s) 27, 431
AcuI CTGAAG 2 cut(s) 189, 244
AfaI GTAC 3 cut(s) 196, 273, 443
AgsI TTSAA 2 cut(s) 79, 470
AluBI AGCT 2 cut(s) 83, 264
AluI AGCT 2 cut(s) 83, 264
AlwI GGATC 2 cut(s) 405, 470
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 27, 431
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AsuNHI GCTAGC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 250
BccI CCATC 2 cut(s) 130, 388
BclI TGATCA 2 cut(s) 160, 592
BfaI CTAG 2 cut(s) 84, 141
BfmI CTRYAG 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 213
BmtI GCTAGC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 302, 591
Bsa29I ATCGAT 2 cut(s) 400, 642
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
BseCI ATCGAT 2 cut(s) 400, 642
BseGI GGATG 3 cut(s) 141, 259, 444
BseMII CTCAG 3 cut(s) 516, 540, 630
BshFI GGCC 1 cut(s) 490
BshVI ATCGAT 2 cut(s) 400, 642
BsiHKCI CYCGRG 1 cut(s) 21
BsnI GGCC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 21
Bsp143I GATC 5 cut(s) 160, 285, 397, 475, 592
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 3 cut(s) 515, 541, 629
BspDI ATCGAT 2 cut(s) 400, 642
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 422
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 405, 470
BssMI GATC 5 cut(s) 160, 285, 397, 475, 592
BstC8I GCNNGC 2 cut(s) 85, 488
BstDEI CTNAG 4 cut(s) 56, 502, 549, 616
BstF5I GGATG 3 cut(s) 141, 259, 444
BstKTI GATC 5 cut(s) 163, 288, 400, 478, 595
BstMBI GATC 5 cut(s) 160, 285, 397, 475, 592
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu15I ATCGAT 2 cut(s) 400, 642
BsuRI GGCC 1 cut(s) 490
BsuTUI ATCGAT 2 cut(s) 400, 642
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 3 cut(s) 141, 259, 444
Cac8I GCNNGC 2 cut(s) 85, 488
CciI TCATGA 1 cut(s) 40
ClaI ATCGAT 2 cut(s) 400, 642
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 195, 272, 442
CviAII CATG 4 cut(s) 41, 109, 496, 590
CviJI RGCY 8 cut(s) 55, 83, 140, 212, 264, 315, 490, 560
CviKI_1 RGCY 8 cut(s) 55, 83, 140, 212, 264, 315, 490, 560
CviQI GTAC 3 cut(s) 195, 272, 442
DdeI CTNAG 4 cut(s) 56, 502, 549, 616
DpnI GATC 5 cut(s) 162, 287, 399, 477, 594
DpnII GATC 5 cut(s) 160, 285, 397, 475, 592
Eco57I CTGAAG 2 cut(s) 189, 244
Eco88I CYCGRG 1 cut(s) 21
FaeI CATG 4 cut(s) 44, 112, 499, 593
FatI CATG 4 cut(s) 40, 108, 495, 589
FbaI TGATCA 2 cut(s) 160, 592
FokI GGATG 3 cut(s) 148, 266, 431
FspBI CTAG 2 cut(s) 84, 141
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 490
HgaI GACGC 1 cut(s) 590
Hin1II CATG 4 cut(s) 44, 112, 499, 593
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 3 cut(s) 47, 112, 413
Hpy166II GTNNAC 2 cut(s) 335, 583
Hpy188I TCNGA 5 cut(s) 117, 127, 253, 269, 619
Hpy188III TCNNGA 6 cut(s) 41, 71, 215, 470, 543, 608
Hpy8I GTNNAC 2 cut(s) 335, 583
HpyAV CCTTC 4 cut(s) 164, 224, 294, 571
HpyCH4V TGCA 1 cut(s) 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 4 cut(s) 56, 502, 549, 616
Hsp92II CATG 4 cut(s) 44, 112, 499, 593
Ksp22I TGATCA 2 cut(s) 160, 592
Kzo9I GATC 5 cut(s) 160, 285, 397, 475, 592
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 228, 430, 472, 555, 556, 561, 570
MaeI CTAG 2 cut(s) 84, 141
MaeIII GTNAC 2 cut(s) 203, 505
MalI GATC 5 cut(s) 162, 287, 399, 477, 594
MboI GATC 5 cut(s) 160, 285, 397, 475, 592
MboII GAAGA 4 cut(s) 29, 56, 250, 485
MflI RGATCY 1 cut(s) 475
MluCI AATT 6 cut(s) 6, 15, 27, 328, 362, 431
MnlI CCTC 7 cut(s) 5, 17, 45, 432, 511, 566, 615
MseI TTAA 2 cut(s) 407, 518
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 5 cut(s) 160, 285, 397, 475, 592
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 4 cut(s) 44, 112, 499, 593
NlaIV GGNNCC 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 21
PagI TCATGA 1 cut(s) 40
PfeI GAWTC 3 cut(s) 47, 112, 413
PflFI GACNNNGTC 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 213
PspXI VCTCGAGB 1 cut(s) 21
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 496
RsaI GTAC 3 cut(s) 196, 273, 443
RsaNI GTAC 3 cut(s) 195, 272, 442
SaqAI TTAA 2 cut(s) 407, 518
Sau3AI GATC 5 cut(s) 160, 285, 397, 475, 592
ScaI AGTACT 1 cut(s) 273
SetI ASST 6 cut(s) 85, 266, 340, 352, 443, 550
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 21
SmlI CTYRAG 3 cut(s) 21, 281, 606
SmoI CTYRAG 3 cut(s) 21, 281, 606
Sse9I AATT 6 cut(s) 6, 15, 27, 328, 362, 431
SspMI CTAG 2 cut(s) 84, 141
TaqI TCGA 4 cut(s) 22, 50, 400, 642
TasI AATT 6 cut(s) 6, 15, 27, 328, 362, 431
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 3 cut(s) 47, 112, 413
Tru1I TTAA 2 cut(s) 407, 518
Tru9I TTAA 2 cut(s) 407, 518
TspDTI ATGAA 6 cut(s) 29, 57, 125, 308, 387, 444
Tth111I GACNNNGTC 1 cut(s) 496
XapI RAATTY 2 cut(s) 27, 431
XhoI CTCGAG 1 cut(s) 21
XspI CTAG 2 cut(s) 84, 141
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.