MD05G1337900.v1.1

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000699
Physical Location & Seq
Reverse (-)
45928791 .. 45930584
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1337900.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGTCTCTGCCATATGATCATAACTTTCTTTGCAATGCAAAAGATATGAGGACGGCTGAGTCCTTGCAATTTGATTTGGGAACTCTCGAAACTGCCACAAATAAGTTCTCCGAAGATAACAAGTTAGGCGAAGGTGGATTCGGTGCAGTTTTCAGGAGGTTGTCAAAAAGCTCCGGACAAGGTGTACAAGAATTTAAGAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGAAATCTTGTCAGGCTTTTAGGATTTTGCTTGGAAGGAGAAGAAACCTTACTTGTTTATGAAAATGTGGCCAACAAAAGCCTTGATTATTTTCTATTTGAACATAAAAAACGAGAACAACTAGATTGGTTGAGCCGCACCATGATAATTGGAGGAATTGCTCGAGGAATTTTGTATCTTCATGAAGATTCGAGGCTTAGAGTTATACATCGTGATTTGAAAGCTAGCAACATTTTATTAGACAGCAACATGAACCCGAAAATATCAGATTTTGGGATGGCTAGAATGTTTGGAGTTGATGATCAAACTGAAGGAAATACCAAAAGAATTGTTGGCACTTATGGTTACATGGCTCCAGAATATGCTATGGAAGGGTTGTATTCAGTAAAATCGGATGTCTTCAGCTTCGGAGTACTTCTGCTTGAGATCATAACGGGGAGAAGGAACTTTTTAGGCTTTCATCACACTAATTGTGGACCTACTCTTATAGGTTATGCTTGGCAATTATGGAATGAAACGAAAGGTTTGGAGTTGATGGATCCCTTGTTAAAAGATTCATGCAGTCCAAATGAATTTTTGAGGAATATCCACATTGGATTATTGTGTGTTCAAGAGGATGCAAACAACAGGCCGACCATGTCATCAGTCGTTCATATGTTAAAAACTGAAACTATTAGTCTTTCCAGACCTGAGAAACCAGCCTTCTTTACAGGGAGATATGTTGATCACCATGATCAAGTGCGTGCTCAAGATTGCTCAGCCAATGGTTTGACGATTTCTATCGATGTTCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

343

Amino Acids

38.74

Weight (kDa)

6.14

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 39 - 295 6.9e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 57 - 296 6.9e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 764, 777
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 3 cut(s) 191, 399, 803
AcuI CTGAAG 2 cut(s) 561, 616
AfaI GTAC 2 cut(s) 186, 645
AgsI TTSAA 4 cut(s) 227, 332, 451, 842
AluBI AGCT 4 cut(s) 171, 223, 455, 636
AluI AGCT 4 cut(s) 171, 223, 455, 636
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 764, 777
Ama87I CYCGRG 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 2 cut(s) 300, 860
ApoI RAATTY 3 cut(s) 191, 399, 803
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 1 cut(s) 950
AsuNHI GCTAGC 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 769
BarI GAAGNNNNNNTAC 4 cut(s) 207, 239, 264, 296
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 979
BccI CCATC 2 cut(s) 502, 760
BceAI ACGGC 1 cut(s) 69
BclI TGATCA 4 cut(s) 16, 532, 955, 964
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 353, 456, 513
BisI GCNGC 1 cut(s) 367
BlpI GCTNAGC 1 cut(s) 988
BlsI GCNGC 1 cut(s) 368
BmcAI AGTACT 1 cut(s) 645
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 2 cut(s) 585, 771
BmsI GCATC 1 cut(s) 838
BmtI GCTAGC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 988
BpuEI CTTGAG 2 cut(s) 674, 963
Bsa29I ATCGAT 1 cut(s) 1014
BsaBI GATNNNNATC 1 cut(s) 1010
BsaWI WCCGGW 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 1014
BseGI GGATG 3 cut(s) 513, 631, 853
BseJI GATNNNNATC 1 cut(s) 1010
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 48, 912, 1002
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 302, 862
BshVI ATCGAT 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 302, 862
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 979
Bsp13I TCCGGA 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 6 cut(s) 16, 532, 657, 769, 955, 964
Bsp1720I GCTNAGC 1 cut(s) 988
BspACI CCGC 1 cut(s) 367
BspANI GGCC 2 cut(s) 302, 862
BspCNI CTCAG 3 cut(s) 49, 913, 1001
BspDI ATCGAT 1 cut(s) 1014
BspEI TCCGGA 1 cut(s) 173
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 585, 771
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 764, 777
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 184
BssMI GATC 6 cut(s) 16, 532, 657, 769, 955, 964
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 457, 975
BstDEI CTNAG 4 cut(s) 57, 428, 921, 988
BstF5I GGATG 3 cut(s) 513, 631, 853
BstKTI GATC 6 cut(s) 19, 535, 660, 772, 958, 967
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 16, 532, 657, 769, 955, 964
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 1014
BsuRI GGCC 2 cut(s) 302, 862
BsuTUI ATCGAT 1 cut(s) 1014
BtsCI GGATG 3 cut(s) 513, 631, 853
Cac8I GCNNGC 2 cut(s) 457, 975
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 1014
Csp6I GTAC 2 cut(s) 185, 644
CviAII CATG 7 cut(s) 373, 413, 481, 580, 789, 868, 962
CviQI GTAC 2 cut(s) 185, 644
DdeI CTNAG 4 cut(s) 57, 428, 921, 988
DpnI GATC 6 cut(s) 18, 534, 659, 771, 957, 966
DpnII GATC 6 cut(s) 16, 532, 657, 769, 955, 964
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 561, 616
Eco88I CYCGRG 1 cut(s) 393
FaeI CATG 7 cut(s) 376, 416, 484, 583, 792, 871, 965
FatI CATG 7 cut(s) 372, 412, 480, 579, 788, 867, 961
FauNDI CATATG 2 cut(s) 13, 885
FbaI TGATCA 4 cut(s) 16, 532, 955, 964
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 3 cut(s) 520, 638, 860
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 3 cut(s) 353, 456, 513
GluI GCNGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 2 cut(s) 302, 862
HapII CCGG 1 cut(s) 174
Hin1II CATG 7 cut(s) 376, 416, 484, 583, 792, 871, 965
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 4 cut(s) 59, 138, 419, 785
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 950
Hpy166II GTNNAC 2 cut(s) 185, 707
Hpy188I TCNGA 4 cut(s) 112, 499, 625, 641
Hpy188III TCNNGA 9 cut(s) 86, 154, 174, 413, 443, 587, 842, 915, 980
Hpy8I GTNNAC 2 cut(s) 185, 707
HpyAV CCTTC 6 cut(s) 125, 260, 536, 596, 666, 943
HpyCH4V TGCA 6 cut(s) 33, 38, 67, 146, 792, 851
HpyF3I CTNAG 4 cut(s) 57, 428, 921, 988
Hsp92II CATG 7 cut(s) 376, 416, 484, 583, 792, 871, 965
Kpn2I TCCGGA 1 cut(s) 173
Ksp22I TGATCA 4 cut(s) 16, 532, 955, 964
Kzo9I GATC 6 cut(s) 16, 532, 657, 769, 955, 964
LmnI GCTCC 2 cut(s) 176, 589
LpnPI CCDG 9 cut(s) 139, 187, 229, 600, 844, 927, 928, 933, 942
LweI GCATC 1 cut(s) 838
MaeI CTAG 3 cut(s) 353, 456, 513
MaeIII GTNAC 1 cut(s) 575
MalI GATC 6 cut(s) 18, 534, 659, 771, 957, 966
MboI GATC 6 cut(s) 16, 532, 657, 769, 955, 964
MboII GAAGA 5 cut(s) 125, 284, 401, 428, 622
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 1 cut(s) 979
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 9 cut(s) 68, 191, 378, 387, 399, 558, 700, 734, 803
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 8 cut(s) 42, 150, 196, 377, 389, 417, 804, 838
Mox20I TGGCCA 1 cut(s) 302
MroI TCCGGA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 302
MseI TTAA 3 cut(s) 195, 779, 890
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 1 cut(s) 174
NdeI CATATG 2 cut(s) 13, 885
NdeII GATC 6 cut(s) 16, 532, 657, 769, 955, 964
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 7 cut(s) 376, 416, 484, 583, 792, 871, 965
NlaIV GGNNCC 2 cut(s) 585, 771
PaeR7I CTCGAG 1 cut(s) 393
PagI TCATGA 1 cut(s) 412
PfeI GAWTC 3 cut(s) 138, 419, 785
PflFI GACNNNGTC 1 cut(s) 868
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 585, 771
PspPI GGNCC 1 cut(s) 707
PspXI VCTCGAGB 1 cut(s) 393
PsuI RGATCY 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 868
RsaI GTAC 2 cut(s) 186, 645
RsaNI GTAC 2 cut(s) 185, 644
SaqAI TTAA 3 cut(s) 195, 779, 890
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 6 cut(s) 16, 532, 657, 769, 955, 964
Sau96I GGNCC 1 cut(s) 707
ScaI AGTACT 1 cut(s) 645
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 1 cut(s) 838
Sfr274I CTCGAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 707
SlaI CTCGAG 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 393, 653, 978
SmoI CTYRAG 3 cut(s) 393, 653, 978
Sse9I AATT 9 cut(s) 68, 191, 378, 387, 399, 558, 700, 734, 803
SsiI CCGC 1 cut(s) 367
SspMI CTAG 3 cut(s) 353, 456, 513
TaqI TCGA 4 cut(s) 87, 394, 422, 1014
TasI AATT 9 cut(s) 68, 191, 378, 387, 399, 558, 700, 734, 803
TatI WGTACW 2 cut(s) 184, 643
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 3 cut(s) 138, 419, 785
Tru1I TTAA 3 cut(s) 195, 779, 890
Tru9I TTAA 3 cut(s) 195, 779, 890
TspDTI ATGAA 9 cut(s) 306, 401, 429, 497, 680, 759, 777, 816, 872
Tth111I GACNNNGTC 1 cut(s) 868
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 191, 399, 803
XhoI CTCGAG 1 cut(s) 393
XspI CTAG 3 cut(s) 353, 456, 513
ZrmI AGTACT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.