Rw0G021200

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00977
OG0000699
Physical Location & Seq
Reverse (-)
823 .. 1348
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021200.1

Sequence Viewer

Length: 435 bp
ATGGCTCCTGAATATGCGATGGAGGGATTGTATTCTATAAAGTCTGACGTCTTTAGCTTCGGAATACTCTTGCTTGAGATTCTAACAGGAAGAAAAAACTTTTTAGGGTTTCATCGTACAAATTGTCCATCAACGCTCCTCAGTTATGCTTGGCAATTATGGAATGAAGGGAAAGTGTTGGAGTTGATGGATCCATTGCTGAAAGATTCTTGCAGTTCAAATGAGTTCTTGAGATACATTCACGTTGGGTTACTGTGTGTTCAAGCAGACGCAAACAGAAGGCCAACCATATCATCGGTTGTATTAATGTTAAACAGTGAAACCATCAGTCTTTCTAAACCTGAACAACCAGCTGCCTTCTTATTTTCAGGAAGATCTCCCAATGATCACAATGATCACATTGGTGCTCCTAGTTATTCACCCAATGGTTTGACG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

5.74

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 101 2.3e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AclWI GGATC 2 cut(s) 185, 198
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 2 cut(s) 219, 263
AleI CACNNNNGTG 1 cut(s) 402
AluBI AGCT 2 cut(s) 57, 353
AluI AGCT 2 cut(s) 57, 353
Alw21I GWGCWC 1 cut(s) 409
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 353
AseI ATTAAT 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 411
BamHI GGATCC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 340
BccI CCATC 4 cut(s) 13, 136, 181, 332
BclI TGATCA 2 cut(s) 385, 394
BfaI CTAG 1 cut(s) 411
BglII AGATCT 1 cut(s) 374
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 6, 192
BpuEI CTTGAG 2 cut(s) 95, 250
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse3DI GCAATG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 409
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 4 cut(s) 190, 374, 385, 394
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 6, 192
BspPI GGATC 2 cut(s) 185, 198
BsrDI GCAATG 1 cut(s) 194
BssMI GATC 4 cut(s) 190, 374, 385, 394
BssNI GRCGYC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 255, 317
BstACI GRCGYC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 140
BstKTI GATC 4 cut(s) 193, 377, 388, 397
BstMBI GATC 4 cut(s) 190, 374, 385, 394
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 190, 374
BstYI RGATCY 2 cut(s) 190, 374
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 322
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 4 cut(s) 5, 57, 283, 353
CviKI_1 RGCY 4 cut(s) 5, 57, 283, 353
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 140
DpnI GATC 4 cut(s) 192, 376, 387, 396
DpnII GATC 4 cut(s) 190, 374, 385, 394
FaiI YATR 5 cut(s) 15, 38, 147, 160, 290
FbaI TGATCA 2 cut(s) 385, 394
Fnu4HI GCNGC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 283
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 48
HinfI GANTC 2 cut(s) 79, 206
HphI GGTGA 1 cut(s) 411
Hpy188I TCNGA 2 cut(s) 46, 62
Hpy188III TCNNGA 3 cut(s) 8, 229, 369
HpyAV CCTTC 3 cut(s) 161, 273, 367
HpyCH4III ACNGT 2 cut(s) 255, 317
HpyCH4IV ACGT 2 cut(s) 48, 243
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 48, 243
Hsp92I GRCGYC 1 cut(s) 48
Ksp22I TGATCA 2 cut(s) 385, 394
Kzo9I GATC 4 cut(s) 190, 374, 385, 394
LmnI GCTCC 3 cut(s) 10, 141, 412
LpnPI CCDG 5 cut(s) 21, 72, 354, 354, 363
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 1 cut(s) 411
MaeII ACGT 2 cut(s) 48, 243
MaeIII GTNAC 1 cut(s) 249
MalI GATC 4 cut(s) 192, 376, 387, 396
MboI GATC 4 cut(s) 190, 374, 385, 394
MboII GAAGA 2 cut(s) 102, 384
MflI RGATCY 2 cut(s) 190, 374
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 2 cut(s) 121, 155
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 2 cut(s) 16, 149
MseI TTAA 2 cut(s) 305, 311
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 353
NdeII GATC 4 cut(s) 190, 374, 385, 394
NlaIV GGNNCC 2 cut(s) 6, 192
OliI CACNNNNGTG 1 cut(s) 402
PfeI GAWTC 2 cut(s) 79, 206
PkrI GCNGC 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 6, 192
PsuI RGATCY 2 cut(s) 190, 374
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 2 cut(s) 305, 311
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 190, 374, 385, 394
SduI GDGCHC 1 cut(s) 409
SetI ASST 5 cut(s) 51, 59, 246, 343, 355
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 74, 229
SmoI CTYRAG 2 cut(s) 74, 229
Sse9I AATT 2 cut(s) 121, 155
SspMI CTAG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 255, 317
TaiI ACGT 2 cut(s) 51, 246
TasI AATT 2 cut(s) 121, 155
TfiI GAWTC 2 cut(s) 79, 206
Tru1I TTAA 2 cut(s) 305, 311
Tru9I TTAA 2 cut(s) 305, 311
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 101, 180
TspRI CASTG 1 cut(s) 322
VspI ATTAAT 1 cut(s) 305
XspI CTAG 1 cut(s) 411
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.