Rmu_ssc0000359.1_g000013

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000359.1
OG0000699
Physical Location & Seq
Reverse (-)
59907 .. 60478
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000359.1_g000013.1.cds

Sequence Viewer

Length: 447 bp
atggctccggaatatgctatggagggattgtattccataaaatctgatgtcttcagcttcggaatactcttgcttgaaattgtaacgggacgaagaaactttttagggtttcatctcgaaaattctgcacctactcttctagcatatgcttggcaattatggaatgaagggaagggcacagagctgatggatccattgttgaaagcttcatgcagtccatatgactttcggagatacatccaaattgggttattgtgttgtcaagaagacgcaaacaataggccaaccatgtcgtcggttgttgaaatgttgaaaactgaaactatcaagcttttgaaacctgaacgagctgccttcttatttacaggaactaatcaccatgatcaaataagtgctcaaagcagttctgcaaatggtttgacaatttctgatgatggaccacgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

148

Amino Acids

16.54

Weight (kDa)

5.32

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 7
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 37
AgsI TTSAA 5 cut(s) 77, 202, 305, 313, 337
AluBI AGCT 5 cut(s) 57, 184, 206, 331, 350
AluI AGCT 5 cut(s) 57, 184, 206, 331, 350
Alw21I GWGCWC 1 cut(s) 397
AlwI GGATC 2 cut(s) 185, 198
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 190
BbsI GAAGAC 2 cut(s) 43, 273
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 181, 428
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BclI TGATCA 1 cut(s) 382
BfaI CTAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 6, 192
BpiI GAAGAC 2 cut(s) 43, 273
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
BseAI TCCGGA 1 cut(s) 7
BseGI GGATG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 179, 397
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 2 cut(s) 190, 382
BspANI GGCC 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 6, 192
BspPI GGATC 2 cut(s) 185, 198
BssMI GATC 2 cut(s) 190, 382
Bst6I CTCTTC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 2 cut(s) 193, 385
BstMBI GATC 2 cut(s) 190, 382
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 43, 273
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 278
CviAII CATG 3 cut(s) 210, 289, 380
CviJI RGCY 7 cut(s) 5, 57, 184, 206, 283, 331, 350
CviKI_1 RGCY 7 cut(s) 5, 57, 184, 206, 283, 331, 350
DpnI GATC 2 cut(s) 192, 384
DpnII GATC 2 cut(s) 190, 382
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 37
FaeI CATG 3 cut(s) 213, 292, 383
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 209, 288, 379
FauNDI CATATG 2 cut(s) 145, 220
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 213, 292, 383
HindIII AAGCTT 2 cut(s) 204, 329
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 4 cut(s) 46, 62, 231, 430
Hpy188III TCNNGA 3 cut(s) 8, 116, 263
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 161, 166, 364
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 128, 213, 410
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 213, 292, 383
Kpn2I TCCGGA 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 190, 382
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 21, 351, 354
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 192, 384
MboI GATC 2 cut(s) 190, 382
MboII GAAGA 4 cut(s) 43, 105, 128, 278
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 179, 397
MluCI AATT 5 cut(s) 78, 121, 155, 243, 423
MnlI CCTC 1 cut(s) 16
MroI TCCGGA 1 cut(s) 7
MspI CCGG 1 cut(s) 8
NdeI CATATG 2 cut(s) 145, 220
NdeII GATC 2 cut(s) 190, 382
NlaIII CATG 3 cut(s) 213, 292, 383
NlaIV GGNNCC 2 cut(s) 6, 192
PkrI GCNGC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 6, 192
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 190
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 190, 382
Sau96I GGNCC 1 cut(s) 437
SduI GDGCHC 2 cut(s) 179, 397
SetI ASST 8 cut(s) 59, 133, 186, 208, 333, 343, 352, 445
SinI GGWCC 1 cut(s) 437
Sse9I AATT 5 cut(s) 78, 121, 155, 243, 423
SspMI CTAG 1 cut(s) 140
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 117
TasI AATT 5 cut(s) 78, 121, 155, 243, 423
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 101, 180, 198
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.