Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000805.1

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Reverse (-)

146113 .. 146514

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000805.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ctgtcgacccttgtctctaacggcacccgtgacaatagcttttataatgccactgctggcggccaaatctcagacgagactgtctacggactcttcctctgccgcggtgatctatccaaagatgcttgcagtgagtgcgtagctgctgtagcctcggatgttgttgaacgctacccaatcgggaaagaggtggttatatggtatgactactgcatgatacgctactctgactattcattcttttctattgatgaggactcgccttgggtgttaatgtggaacaaggagaatgttacgcaggaaggggatgcatttgtagcatcctttaactacgcagtgggacttaccatgaataggttagtacaaaaggttaccagcgccacaaaaaagtttgcgacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

4.5

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	23
AccI	GTMKAC	2 cut(s)	5, 84
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	60, 103, 105
AcoI	YGGCCR	1 cut(s)	61
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	2 cut(s)	39, 143
AluI	AGCT	2 cut(s)	39, 143
Alw26I	GTCTC	2 cut(s)	19, 71
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	19, 71
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	3 cut(s)	61, 103, 144
BlsI	GCNGC	3 cut(s)	62, 104, 145
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	3 cut(s)	112, 298, 329
BoxI	GACNNNNGTC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	103, 153, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	103, 153, 263
BseGI	GGATG	3 cut(s)	163, 313, 320
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	19, 71
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	3 cut(s)	60, 103, 105
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	103, 153, 263
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	58, 127
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	163, 313, 320
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	19, 71
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 149, 219, 317
BstPAI	GACNNNNGTC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	163, 313, 320
BtsI	GCAGTG	3 cut(s)	51, 136, 342
BtsIMutI	CAGTG	3 cut(s)	51, 136, 342
Cac8I	GCNNGC	2 cut(s)	58, 127
CfoI	GCGC	1 cut(s)	380
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	2 cut(s)	214, 349
CviJI	RGCY	4 cut(s)	39, 63, 143, 152
CviKI_1	RGCY	4 cut(s)	39, 63, 143, 152
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	2 cut(s)	217, 352
FaiI	YATR	6 cut(s)	45, 197, 199, 204, 215, 350
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	213, 348
FblI	GTMKAC	2 cut(s)	5, 84
Fnu4HI	GCNGC	3 cut(s)	61, 103, 144
FokI	GGATG	3 cut(s)	170, 307, 320
Fsp4HI	GCNGC	3 cut(s)	61, 103, 144
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	3 cut(s)	61, 103, 144
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	217, 352
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	90, 257
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	6, 85
Hpy188I	TCNGA	3 cut(s)	73, 157, 229
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	6, 85
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	129, 213, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 149, 219, 317
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	217, 352
HspAI	GCGC	1 cut(s)	378
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	42, 284, 388
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	112, 298, 329
MaeIII	GTNAC	3 cut(s)	29, 292, 370
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	84, 251
MnlI	CCTC	4 cut(s)	107, 163, 181, 247
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	2 cut(s)	272, 327
MspA1I	CMGCKG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	135, 149, 219, 317
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	217, 352
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	62, 104, 145
PleI	GAGTC	2 cut(s)	84, 251
PpsI	GAGTC	2 cut(s)	84, 251
PshAI	GACNNNNGTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SacII	CCGCGG	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	272, 327
SatI	GCNGC	3 cut(s)	61, 103, 144
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	84, 251
SetI	ASST	6 cut(s)	41, 145, 192, 359, 372, 401
SfaNI	GCATC	3 cut(s)	112, 298, 329
SfcI	CTRYAG	1 cut(s)	147
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SsiI	CCGC	3 cut(s)	60, 103, 105
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	2 cut(s)	63, 105
Tru1I	TTAA	2 cut(s)	272, 327
Tru9I	TTAA	2 cut(s)	272, 327
TscAI	CASTG	3 cut(s)	58, 136, 342
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	225, 365
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	3 cut(s)	58, 136, 342
XmiI	GTMKAC	2 cut(s)	5, 84
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.