Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

2734810 .. 2737802

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTGCTATGGCAGAAGTGGTCCTTCTCTTCCTTTCAATGGTTGCCTTGCTCGGCTTTCCCACTACAAAAGCCGACTATCTCGCCCATGTCTGCCCAAACACCACCGTCTTCACCCCAAACTCCATCTTCCAAACCAATCGCGACCAATTGCTGTATACCCTTGTCTATAATGCCAGCCGTGACACCGGTTTTTACCAGACCACTGCTGGCAACCAGATCTCAGAGGAGACAGTGGACGGCCTCTTCCTCTGCCGCGGTGACGTGTCCGCAGACGCTTGCAGAGACTGCGTGTACACCGCGGCCTCAAAGGTTGTCCAAATGTGTCCCGTCGAGAAACAGGTTGTCATATGGTACGACGACTGCATGGTACGCTACTCTAACCAGTCATTTCTTTCTACCGTGGAAGACTCATCTTGGGTCTTCATGAGGAACACCACGAATGCGACGCAGGTTGGACATAATAGAACAACCCTATTTAACCAGGTTCTAGCAAATACCATGATTGGGCTAGTCCTTGAGGTTCTCATCGCCGCTGATAAGTTTGCAACCAAAGAAGATTCCACAGTGTTTACTACGCTGTACACCCTCGGACAGTGCACGCAGGATCTGCCCACACCAAATTGCAGTGGGTGTCTTACAGGAGCCATAGCACGACTTCCATTTTGCTGTAGTGGAAAACTAGGGGGAAGAGTTCTGTATCCAAGTTGTAATATTAGGTACGAGGTGTACCCTTCATCACCTCCTCCGCCAGCCCCAGTGGCAACGGTGCGTAAAGGAAAAAATAAACTCTCATCCATAGTCATTCCTAGCATTCTTGCTCCAGTTGCTCTCTGTGTGCTAGTTGTGGTTGTGGCCGGATGTTTCATTCGCAAATTAAAAAGAGCCAAACGACAACAAAATGAAGGGGATTTACCTAGTTGCTCTGTCAATGCTTTGACGATTTCTGATGTTATCCCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

321

Amino Acids

34.99

Weight (kDa)

8.13

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	32 - 129	2e-23	Salt stress response/antifungal
Stress-antifung	PF01657	157 - 243	9.5e-10	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	3 cut(s)	144, 258, 302
AciI	CCGC	7 cut(s)	256, 258, 270, 300, 302, 534, 749
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	855
AfaI	GTAC	6 cut(s)	296, 356, 372, 584, 722, 731
AfiI	CCNNNNNNNGG	2 cut(s)	40, 507
AflIII	ACRYGT	1 cut(s)	264
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	483
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	2 cut(s)	224, 279
Alw44I	GTGCAC	1 cut(s)	598
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	2 cut(s)	288, 610
AoxI	GGCC	3 cut(s)	241, 303, 855
ApaLI	GTGCAC	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
AsiGI	ACCGGT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	106, 272, 732
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
BbsI	GAAGAC	3 cut(s)	103, 414, 415
Bbv12I	GWGCWC	1 cut(s)	602
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	165, 256
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	224, 279
BfaI	CTAG	6 cut(s)	491, 512, 683, 810, 842, 918
BfmI	CTRYAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	711
BglI	GCCNNNNNGGC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	4 cut(s)	6, 256, 303, 534
BlsI	GCNGC	4 cut(s)	7, 257, 304, 535
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	3 cut(s)	103, 414, 415
BpmI	CTGGAG	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	256, 300, 402, 589
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 507
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	385, 758, 824
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	4 cut(s)	256, 300, 402, 589
BseGI	GGATG	2 cut(s)	794, 866
BseLI	CCNNNNNNNGG	2 cut(s)	40, 507
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	3 cut(s)	385, 758, 824
BseRI	GAGGAG	2 cut(s)	242, 735
BseSI	GKGCMC	1 cut(s)	602
Bsh1236I	CGCG	3 cut(s)	144, 258, 302
BshFI	GGCC	3 cut(s)	243, 305, 857
BshTI	ACCGGT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	189, 858
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	40, 507
BsmAI	GTCTC	2 cut(s)	224, 279
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	2 cut(s)	448, 813
BsnI	GGCC	3 cut(s)	243, 305, 857
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	2 cut(s)	294, 582
Bsp143I	GATC	2 cut(s)	219, 607
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	7 cut(s)	256, 258, 270, 300, 302, 534, 749
BspANI	GGCC	3 cut(s)	243, 305, 857
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	3 cut(s)	144, 258, 302
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	2 cut(s)	294, 582
BsrI	ACTGG	3 cut(s)	385, 758, 824
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	256, 300, 402, 589
BssMI	GATC	2 cut(s)	219, 607
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	6 cut(s)	109, 235, 403, 568, 597, 769
Bst6I	CTCTTC	3 cut(s)	35, 251, 685
BstAPI	GCANNNNNTGC	2 cut(s)	288, 610
BstAUI	TGTACA	2 cut(s)	294, 582
BstC8I	GCNNGC	5 cut(s)	178, 211, 280, 602, 753
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	3 cut(s)	256, 300, 402
BstF5I	GGATG	2 cut(s)	794, 866
BstFNI	CGCG	3 cut(s)	144, 258, 302
BstKTI	GATC	2 cut(s)	222, 610
BstMAI	GTCTC	2 cut(s)	224, 279
BstMBI	GATC	2 cut(s)	219, 607
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 288, 372, 610, 761, 827
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	3 cut(s)	144, 258, 302
BstV2I	GAAGAC	3 cut(s)	103, 414, 415
BstX2I	RGATCY	2 cut(s)	219, 607
BstYI	RGATCY	2 cut(s)	219, 607
BstZ17I	GTATAC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	243, 305, 857
BtgI	CCRYGG	3 cut(s)	256, 300, 402
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	794, 866
BtsI	GCAGTG	2 cut(s)	204, 634
BtsIMutI	CAGTG	6 cut(s)	204, 240, 573, 602, 634, 765
BtuMI	TCGCGA	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	5 cut(s)	178, 211, 280, 602, 753
CaiI	CAGNNNCTG	2 cut(s)	288, 610
CciI	TCATGA	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	22
Cfr42I	CCGCGG	2 cut(s)	259, 303
CseI	GACGC	2 cut(s)	284, 457
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	6 cut(s)	295, 355, 371, 583, 721, 730
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	4 cut(s)	89, 367, 427, 502
CviQI	GTAC	6 cut(s)	295, 355, 371, 583, 721, 730
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	2 cut(s)	221, 609
DpnII	GATC	2 cut(s)	219, 607
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	3 cut(s)	35, 251, 685
EarI	CTCTTC	3 cut(s)	35, 251, 685
EciI	GGCGGA	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	92, 370, 430, 505
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	4 cut(s)	88, 366, 426, 501
FauNDI	CATATG	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	4 cut(s)	6, 256, 303, 534
FokI	GGATG	2 cut(s)	781, 873
Fsp4HI	GCNGC	4 cut(s)	6, 256, 303, 534
FspBI	CTAG	6 cut(s)	491, 512, 683, 810, 842, 918
GluI	GCNGC	4 cut(s)	6, 256, 303, 534
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	3 cut(s)	243, 305, 857
HapII	CCGG	2 cut(s)	189, 858
HgaI	GACGC	2 cut(s)	284, 457
Hin1II	CATG	4 cut(s)	92, 370, 430, 505
HinfI	GANTC	2 cut(s)	410, 560
HpaII	CCGG	2 cut(s)	189, 858
HphI	GGTGA	3 cut(s)	106, 272, 732
Hpy166II	GTNNAC	8 cut(s)	159, 238, 295, 297, 573, 585, 600, 730
Hpy188I	TCNGA	3 cut(s)	226, 593, 949
Hpy188III	TCNNGA	3 cut(s)	143, 334, 427
Hpy8I	GTNNAC	8 cut(s)	159, 238, 295, 297, 573, 585, 600, 730
Hpy99I	CGWCG	3 cut(s)	335, 362, 451
HpyAV	CCTTC	3 cut(s)	35, 744, 899
HpyCH4III	ACNGT	6 cut(s)	109, 235, 403, 568, 597, 769
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	5 cut(s)	282, 366, 548, 600, 627
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 288, 372, 610, 761, 827
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	92, 370, 430, 505
KspI	CCGCGG	2 cut(s)	259, 303
Kzo9I	GATC	2 cut(s)	219, 607
LmnI	GCTCC	2 cut(s)	644, 826
MabI	ACCWGGT	1 cut(s)	483
MaeI	CTAG	6 cut(s)	491, 512, 683, 810, 842, 918
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	182, 260
MalI	GATC	2 cut(s)	221, 609
MboI	GATC	2 cut(s)	219, 607
MboII	GAAGA	8 cut(s)	22, 103, 121, 238, 415, 419, 569, 702
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	219, 607
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	3 cut(s)	149, 622, 875
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	436
MseI	TTAA	2 cut(s)	480, 878
MspA1I	CMGCKG	3 cut(s)	258, 302, 536
MspI	CCGG	2 cut(s)	189, 858
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	2 cut(s)	448, 813
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	3 cut(s)	144, 258, 302
MwoI	GCNNNNNNNGC	6 cut(s)	11, 288, 372, 610, 761, 827
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	2 cut(s)	219, 607
NlaIII	CATG	4 cut(s)	92, 370, 430, 505
NlaIV	GGNNCC	1 cut(s)	646
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	182, 260
NruI	TCGCGA	1 cut(s)	144
PagI	TCATGA	1 cut(s)	426
PctI	GAATGC	2 cut(s)	448, 813
PfeI	GAWTC	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	7, 257, 304, 535
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	2 cut(s)	288, 610
PsuI	RGATCY	2 cut(s)	219, 607
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	6 cut(s)	296, 356, 372, 584, 722, 731
RsaNI	GTAC	6 cut(s)	295, 355, 371, 583, 721, 730
SacII	CCGCGG	2 cut(s)	259, 303
SaqAI	TTAA	2 cut(s)	480, 878
SatI	GCNGC	4 cut(s)	6, 256, 303, 534
Sau3AI	GATC	2 cut(s)	219, 607
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	602
SexAI	ACCWGGT	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	670
Sfr303I	CCGCGG	2 cut(s)	259, 303
SgrBI	CCGCGG	2 cut(s)	259, 303
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	149, 622, 875
SsiI	CCGC	7 cut(s)	256, 258, 270, 300, 302, 534, 749
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	6 cut(s)	491, 512, 683, 810, 842, 918
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	6 cut(s)	109, 235, 403, 568, 597, 769
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	149, 622, 875
TatI	WGTACW	2 cut(s)	294, 582
TauI	GCSGC	3 cut(s)	258, 305, 536
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	480, 878
Tru9I	TTAA	2 cut(s)	480, 878
TscAI	CASTG	6 cut(s)	211, 240, 573, 602, 634, 765
TseFI	GTSAC	2 cut(s)	182, 260
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	182, 260
TspDTI	ATGAA	4 cut(s)	415, 726, 856, 918
TspRI	CASTG	6 cut(s)	211, 240, 573, 602, 634, 765
VneI	GTGCAC	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	6 cut(s)	491, 512, 683, 810, 842, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.