Rw6G011890

transmembrane receptor protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000699
Physical Location & Seq
Forward (+)
21319881 .. 21320660
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011890.1

Sequence Viewer

Length: 546 bp
ATGAATCCAAAAGTATCAGATTTTGGGATGGCAAAAATGTTTGGAGTGGATGATCAAACTCAAGGAAACACAAGAAGAATTGTAGGCACTTATGGTTACATGGCTCCGGAATATGCTATGGAGGGATTGTATTCCATAAGATCTGATGTCTTCAGCTTCGGAATACTCTTGCTTGAAATTGTAACGGGACGAAGAAACTTTTTAGGGTTTCATCTCGAAAATTCTGCACCTACTCTTCTAGCATATGCTTGGCAATTATGGAATGAAGGGAAGGGCACGGAGCTGATGGATCCATTGTTGAAAGCTTCATGCAGTCCAGATGACTTTCGGAGATACATCCAAATTGGGTTATTGTGTTGTCAAGAAGACGCAAACAATAGGCCAACCATGTCGTCGGTTGTTGAAATGTTGAAAACTGAAACTATCAAGCTTTCGAAACCTGAACGAGCTGCCTTCTTATTTACAGGAACTAATCACCATGATCAAATAAGTGCTCAAAGTAGTTCTGCAAATGGTTTGACAATTTCTGATGATGGACCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

5.36

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 135 9.8e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 137 4.5e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AclWI GGATC 2 cut(s) 284, 297
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 136
AgsI TTSAA 4 cut(s) 176, 301, 404, 412
AluBI AGCT 5 cut(s) 156, 283, 305, 430, 449
AluI AGCT 5 cut(s) 156, 283, 305, 430, 449
Alw21I GWGCWC 1 cut(s) 496
AlwI GGATC 2 cut(s) 284, 297
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 142, 372
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 436
BccI CCATC 3 cut(s) 22, 280, 527
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BclI TGATCA 2 cut(s) 52, 481
BfaI CTAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 2 cut(s) 105, 291
BpiI GAAGAC 2 cut(s) 142, 372
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
BseAI TCCGGA 1 cut(s) 106
BseGI GGATG 3 cut(s) 33, 55, 336
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 278, 496
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 4 cut(s) 52, 140, 289, 481
BspANI GGCC 1 cut(s) 382
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 105, 291
BspPI GGATC 2 cut(s) 284, 297
BspT104I TTCGAA 1 cut(s) 434
BssMI GATC 4 cut(s) 52, 140, 289, 481
Bst6I CTCTTC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 434
BstF5I GGATG 3 cut(s) 33, 55, 336
BstKTI GATC 4 cut(s) 55, 143, 292, 484
BstMBI GATC 4 cut(s) 52, 140, 289, 481
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 2 cut(s) 142, 372
BstX2I RGATCY 2 cut(s) 140, 289
BstYI RGATCY 2 cut(s) 140, 289
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 33, 55, 336
Cfr13I GGNCC 1 cut(s) 536
CseI GACGC 1 cut(s) 377
CviAII CATG 4 cut(s) 100, 309, 388, 479
CviJI RGCY 7 cut(s) 104, 156, 283, 305, 382, 430, 449
CviKI_1 RGCY 7 cut(s) 104, 156, 283, 305, 382, 430, 449
DpnI GATC 4 cut(s) 54, 142, 291, 483
DpnII GATC 4 cut(s) 52, 140, 289, 481
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 136
FaeI CATG 4 cut(s) 103, 312, 391, 482
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 99, 308, 387, 478
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 2 cut(s) 52, 481
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 3 cut(s) 40, 62, 323
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 382
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 377
Hin1II CATG 4 cut(s) 103, 312, 391, 482
HindIII AAGCTT 2 cut(s) 303, 428
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 467
Hpy188I TCNGA 5 cut(s) 19, 145, 161, 330, 529
Hpy188III TCNNGA 4 cut(s) 107, 215, 317, 362
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 260, 265, 463
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 3 cut(s) 227, 312, 509
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 4 cut(s) 103, 312, 391, 482
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 2 cut(s) 52, 481
Kzo9I GATC 4 cut(s) 52, 140, 289, 481
LmnI GCTCC 2 cut(s) 109, 280
LpnPI CCDG 4 cut(s) 120, 330, 450, 453
Lsp1109I GCAGC 1 cut(s) 436
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 95, 181
MalI GATC 4 cut(s) 54, 142, 291, 483
MboI GATC 4 cut(s) 52, 140, 289, 481
MboII GAAGA 5 cut(s) 87, 142, 204, 227, 377
MflI RGATCY 2 cut(s) 140, 289
MhlI GDGCHC 2 cut(s) 278, 496
MluCI AATT 6 cut(s) 78, 177, 220, 254, 342, 522
MnlI CCTC 1 cut(s) 115
MroI TCCGGA 1 cut(s) 106
MspI CCGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 244
NdeII GATC 4 cut(s) 52, 140, 289, 481
NlaIII CATG 4 cut(s) 103, 312, 391, 482
NlaIV GGNNCC 2 cut(s) 105, 291
NspV TTCGAA 1 cut(s) 434
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 105, 291
PspPI GGNCC 1 cut(s) 536
PsuI RGATCY 2 cut(s) 140, 289
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 52, 140, 289, 481
Sau96I GGNCC 1 cut(s) 536
SduI GDGCHC 2 cut(s) 278, 496
SetI ASST 8 cut(s) 158, 232, 285, 307, 432, 442, 451, 544
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 6 cut(s) 78, 177, 220, 254, 342, 522
SspMI CTAG 1 cut(s) 239
TaiI ACGT 1 cut(s) 544
TaqI TCGA 2 cut(s) 216, 434
TasI AATT 6 cut(s) 78, 177, 220, 254, 342, 522
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 17, 200, 279, 297
TspGWI ACGGA 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 1 cut(s) 220
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.