Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000315.1

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Reverse (-)

280899 .. 281819

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000315.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgccttgttttaacttgcaatatacgccaatattgattctctattttctttacgcgttgagcttgctctgcttgagcagtacagtagcgtatgataactacctcgaccatttctgcccaaacaccaccactttcaccgcaaactcctccttccaattccatcgcgatcaactgctgtcgacccttgtctccaacgccacccgtgacaatggcttttacaatgccactgctggcgaccaaatcgcaaacgagaccgtcttcggactcttcctctgccgcggtgacctgtccaaagatgcttgcagtgactgcgtagtagctgtagcctcggatgttgtgaaacgctgcccaatcgagaaacaggcaattatatggtatgaccactgcatgatacgctactctaactattcattcttttctattgatgaggactcgcctttccacttcaagtggaactggaacgaggagaatgttaggcaggagggggatgcatttgcaccatcctttaacaacgtagtgggacttactatgaagcttttagtacaacaggttgccaacgccacaaaaaagtttgcgaccaaagaatcgtacaccaaagtgttatttggacagctgttctacagccttggacagtgcacgcaggatctgtccattgcagattgcaatagctgtcttactagagccacagaaaaccttcagactatgaatgctacaggaaaaaaaggggcgcttcttctatcaccaagttgtaatataaggttcgatttggaacccttttacaccgctctaccttctccgccacccatggtagtatcccctccaccggccccggtagcactgccaacacttggaggtaaaactatacttaatacacaactgtacattctccatttgaccaatcccacctttggatttggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

306

Amino Acids

34.08

Weight (kDa)

5.5

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	3 cut(s)	56, 165, 279
AciI	CCGC	5 cut(s)	138, 277, 279, 783, 797
AclWI	GGATC	1 cut(s)	651
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	4 cut(s)	82, 543, 590, 881
AfiI	CCNNNNNNNGG	3 cut(s)	823, 848, 908
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	448
AleI	CACNNNNGTG	1 cut(s)	596
AluBI	AGCT	5 cut(s)	63, 320, 535, 613, 669
AluI	AGCT	5 cut(s)	63, 320, 535, 613, 669
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	2 cut(s)	193, 245
Alw44I	GTGCAC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	651
AlwNI	CAGNNNCTG	2 cut(s)	309, 646
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	634
ApeKI	GCWGC	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	826
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	3 cut(s)	127, 293, 732
BaeGI	GKGCMC	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	168, 508
BciVI	GTATCC	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	2 cut(s)	193, 245
BfaI	CTAG	2 cut(s)	678, 919
BfmI	CTRYAG	3 cut(s)	321, 619, 711
BfoI	RGCGCY	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	2 cut(s)	277, 346
BlsI	GCNGC	2 cut(s)	278, 347
Bme1390I	CCNGG	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	826
BmiI	GGNNCC	2 cut(s)	771, 828
BmrFI	CCNGG	1 cut(s)	830
BmsI	GCATC	2 cut(s)	286, 478
BoxI	GACNNNNGTC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	277, 327, 625, 804, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	823, 848, 908
Bse118I	RCCGGY	1 cut(s)	823
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	651
BseDI	CCNNGG	5 cut(s)	277, 327, 625, 804, 828
BseGI	GGATG	3 cut(s)	337, 493, 500
BseLI	CCNNNNNNNGG	3 cut(s)	823, 848, 908
BseMI	GCAATG	1 cut(s)	651
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	136, 479
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	3 cut(s)	56, 165, 279
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	824, 830
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	823, 848, 908
BsmAI	GTCTC	2 cut(s)	193, 245
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	2 cut(s)	166, 643
Bsp19I	CCATGG	1 cut(s)	804
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	5 cut(s)	138, 277, 279, 783, 797
BspANI	GGCC	1 cut(s)	827
BspFNI	CGCG	3 cut(s)	56, 165, 279
BspLI	GGNNCC	2 cut(s)	771, 828
BspPI	GGATC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	1 cut(s)	823
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	823
BssECI	CCNNGG	5 cut(s)	277, 327, 625, 804, 828
BssMI	GATC	2 cut(s)	166, 643
BssT1I	CCWWGG	2 cut(s)	625, 804
Bst4CI	ACNGT	4 cut(s)	85, 256, 633, 879
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	879
BstC8I	GCNNGC	4 cut(s)	65, 232, 301, 638
BstDSI	CCRYGG	2 cut(s)	277, 804
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	3 cut(s)	337, 493, 500
BstFNI	CGCG	3 cut(s)	56, 165, 279
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	2 cut(s)	169, 646
BstMAI	GTCTC	2 cut(s)	193, 245
BstMBI	GATC	2 cut(s)	166, 643
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 69, 309, 393, 833
BstPAI	GACNNNNGTC	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	828
BstSFI	CTRYAG	3 cut(s)	321, 619, 711
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	3 cut(s)	56, 165, 279
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	2 cut(s)	277, 804
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	337, 493, 500
BtsI	GCAGTG	4 cut(s)	225, 310, 382, 836
BtsIMutI	CAGTG	5 cut(s)	225, 310, 382, 638, 836
BtuMI	TCGCGA	1 cut(s)	165
Cac8I	GCNNGC	4 cut(s)	65, 232, 301, 638
CaiI	CAGNNNCTG	2 cut(s)	309, 646
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	823
Cfr13I	GGNCC	1 cut(s)	826
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	81, 542, 589, 880
CviAII	CATG	2 cut(s)	388, 805
CviQI	GTAC	4 cut(s)	81, 542, 589, 880
DpnI	GATC	2 cut(s)	168, 645
DpnII	GATC	2 cut(s)	166, 643
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	625, 804
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	625, 804
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	2 cut(s)	625, 804
FaeI	CATG	2 cut(s)	391, 808
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	387, 804
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	277, 346
FokI	GGATG	3 cut(s)	344, 487, 500
Fsp4HI	GCNGC	2 cut(s)	277, 346
FspBI	CTAG	2 cut(s)	678, 919
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	2 cut(s)	277, 346
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	2 cut(s)	824, 830
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	2 cut(s)	391, 808
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	4 cut(s)	37, 264, 431, 584
HpaII	CCGG	2 cut(s)	824, 830
HphI	GGTGA	3 cut(s)	127, 293, 732
Hpy166II	GTNNAC	3 cut(s)	180, 591, 636
Hpy188I	TCNGA	3 cut(s)	263, 331, 699
Hpy188III	TCNNGA	2 cut(s)	164, 355
Hpy8I	GTNNAC	3 cut(s)	180, 591, 636
HpyAV	CCTTC	3 cut(s)	160, 704, 801
HpyCH4III	ACNGT	4 cut(s)	85, 256, 633, 879
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	8 cut(s)	19, 303, 387, 491, 497, 636, 656, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 69, 309, 393, 833
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	391, 808
HspAI	GCGC	1 cut(s)	728
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	166, 643
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	286, 478
MaeI	CTAG	2 cut(s)	678, 919
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	203, 281, 305
MalI	GATC	2 cut(s)	168, 645
MbiI	CCGCTC	1 cut(s)	785
MboI	GATC	2 cut(s)	166, 643
MboII	GAAGA	3 cut(s)	250, 259, 725
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	2 cut(s)	155, 366
MluI	ACGCGT	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	258, 425
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	113, 157, 281, 337, 421, 457, 475, 828, 845
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	3 cut(s)	12, 507, 867
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	279, 613
MspI	CCGG	2 cut(s)	824, 830
MspR9I	CCNGG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	3 cut(s)	56, 165, 279
MwoI	GCNNNNNNNGC	5 cut(s)	25, 69, 309, 393, 833
NciI	CCSGG	1 cut(s)	830
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	2 cut(s)	166, 643
NlaIII	CATG	2 cut(s)	391, 808
NlaIV	GGNNCC	2 cut(s)	771, 828
NmuCI	GTSAC	3 cut(s)	203, 281, 305
NruI	TCGCGA	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	493
OliI	CACNNNNGTG	1 cut(s)	596
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	37, 584
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	2 cut(s)	278, 347
PleI	GAGTC	2 cut(s)	258, 425
PpsI	GAGTC	2 cut(s)	258, 425
PshAI	GACNNNNGTC	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	771, 828
PspPI	GGNCC	1 cut(s)	826
PstNI	CAGNNNCTG	2 cut(s)	309, 646
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	613
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	4 cut(s)	82, 543, 590, 881
RsaNI	GTAC	4 cut(s)	81, 542, 589, 880
RseI	CAYNNNNRTG	1 cut(s)	596
SacII	CCGCGG	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	12, 507, 867
SatI	GCNGC	2 cut(s)	277, 346
Sau3AI	GATC	2 cut(s)	166, 643
Sau96I	GGNCC	1 cut(s)	826
SchI	GAGTC	2 cut(s)	258, 425
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	2 cut(s)	286, 478
SfcI	CTRYAG	3 cut(s)	321, 619, 711
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	155, 366
SsiI	CCGC	5 cut(s)	138, 277, 279, 783, 797
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	2 cut(s)	678, 919
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	2 cut(s)	625, 804
TaaI	ACNGT	4 cut(s)	85, 256, 633, 879
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	4 cut(s)	105, 179, 354, 762
TasI	AATT	2 cut(s)	155, 366
TatI	WGTACW	3 cut(s)	80, 541, 879
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	37, 584
Tru1I	TTAA	3 cut(s)	12, 507, 867
Tru9I	TTAA	3 cut(s)	12, 507, 867
TscAI	CASTG	5 cut(s)	232, 310, 389, 638, 843
TseFI	GTSAC	3 cut(s)	203, 281, 305
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	3 cut(s)	203, 281, 305
TspDTI	ATGAA	3 cut(s)	399, 545, 719
TspRI	CASTG	5 cut(s)	232, 310, 389, 638, 843
Van91I	CCANNNNNTGG	1 cut(s)	848
VneI	GTGCAC	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	2 cut(s)	678, 919
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.