Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

128598 .. 129464

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001851.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggtttcgttacagaatatgcccgctagtgttttgttattcttggcctttatgattagcttcacgaccagcagcagtgaagccgcttcctatatctttcatcactgccaaaaaaacacaaccagtagcaacttattcacccccaactccacctaccaatccaatctcaactttctccttctcaccctttcctcaaaagccagcatagcacgaaccggttttcacaaccacacagccggcaagaaggcagctgataccgtgtacggcctcttcctttgccgcggtgacaagtccagaaatgcttgcgcagaatgcgtcgtgacagcagccacggaggcactccgacgttgcaacactcataaacagacgattatatggtacaacgaatgcatgctacgctactcgaacaagaggttcttcgccaccccttcgcacctgccttaccggttccagcgtaccaacacagagaatgttactgaaccgagccgattcattccggtattggcaactacagttaatgagttagcccagtttgtagctgccagcgccaactactttgctaccaaagaagcgaatgtatataatggctcaaataatattacgctatacagcctcggacagtgcacccctgacttgtcggcagcagattgcgactcgtgccttcgctcacccgatgtcatggacgatataatttccctgggattccaagggggaaagtttctatatcccacttgtagcattatttaccagctctccccattctatgacgtcaccacaacatcaacactacggactactgatctccctaaaggtgaaaagattaagctagatttaattacttttttcttcaatatattaacaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

288

Amino Acids

32.05

Weight (kDa)

8.48

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	444
AatII	GACGTC	1 cut(s)	771
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	444
AccII	CGCG	1 cut(s)	282
AciI	CCGC	4 cut(s)	24, 84, 280, 282
AcyI	GRCGYC	1 cut(s)	768
AfaI	GTAC	3 cut(s)	263, 380, 457
AgeI	ACCGGT	2 cut(s)	215, 444
AgsI	TTSAA	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	6 cut(s)	60, 251, 539, 751, 826, 864
AluI	AGCT	6 cut(s)	60, 251, 539, 751, 826, 864
Alw21I	GWGCWC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	622
AoxI	GGCC	2 cut(s)	45, 265
ApaLI	GTGCAC	1 cut(s)	622
ApeKI	GCWGC	5 cut(s)	72, 248, 326, 539, 641
AsiGI	ACCGGT	2 cut(s)	215, 444
AspLEI	GCGC	2 cut(s)	308, 548
AsuHPI	GGTGA	6 cut(s)	130, 175, 296, 660, 763, 824
BaeGI	GKGCMC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BauI	CACGAG	1 cut(s)	655
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	5 cut(s)	84, 260, 338, 526, 653
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	698
BfaI	CTAG	2 cut(s)	27, 827
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	73, 84, 249, 280, 327, 540, 642
BlsI	GCNGC	7 cut(s)	74, 85, 250, 281, 328, 541, 643
Bme1390I	CCNGG	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	1 cut(s)	698
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	768
BsaJI	CCNNGG	6 cut(s)	280, 330, 613, 696, 697, 706
BsaWI	WCCGGW	3 cut(s)	215, 444, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bse118I	RCCGGY	3 cut(s)	215, 236, 444
Bse1I	ACTGG	2 cut(s)	123, 529
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	6 cut(s)	280, 330, 613, 696, 697, 706
BseNI	ACTGG	2 cut(s)	123, 529
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	5 cut(s)	84, 260, 338, 526, 653
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	47, 267
BshTI	ACCGGT	2 cut(s)	215, 444
BsiHKAI	GWGCWC	1 cut(s)	626
BsiSI	CCGG	4 cut(s)	216, 237, 445, 497
BsmI	GAATGC	2 cut(s)	317, 392
BsnI	GGCC	2 cut(s)	47, 267
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	1 cut(s)	799
BspACI	CCGC	4 cut(s)	24, 84, 280, 282
BspANI	GGCC	2 cut(s)	47, 267
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	444
BsrFI	RCCGGY	3 cut(s)	215, 236, 444
BsrI	ACTGG	2 cut(s)	123, 529
BssAI	RCCGGY	3 cut(s)	215, 236, 444
BssECI	CCNNGG	6 cut(s)	280, 330, 613, 696, 697, 706
BssMI	GATC	1 cut(s)	799
BssNI	GRCGYC	1 cut(s)	768
BssSI	CACGAG	1 cut(s)	655
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	655
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	3 cut(s)	259, 514, 621
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	768
BstC8I	GCNNGC	6 cut(s)	24, 202, 238, 304, 392, 544
BstDSI	CCRYGG	2 cut(s)	280, 330
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	308, 548
BstKTI	GATC	1 cut(s)	802
BstMBI	GATC	1 cut(s)	799
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 312, 335, 396, 545, 657
BstNI	CCWGG	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	84, 260, 338, 526, 653
BsuRI	GGCC	2 cut(s)	47, 267
BtgI	CCRYGG	2 cut(s)	280, 330
BtsI	GCAGTG	2 cut(s)	82, 103
BtsIMutI	CAGTG	3 cut(s)	82, 103, 626
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	6 cut(s)	24, 202, 238, 304, 392, 544
CfoI	GCGC	2 cut(s)	308, 548
Cfr10I	RCCGGY	3 cut(s)	215, 236, 444
Cfr42I	CCGCGG	1 cut(s)	283
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	262, 379, 456
CspAI	ACCGGT	2 cut(s)	215, 444
CviAII	CATG	2 cut(s)	391, 679
CviQI	GTAC	3 cut(s)	262, 379, 456
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	2 cut(s)	394, 682
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	390, 678
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	7 cut(s)	73, 84, 249, 280, 327, 540, 642
Fsp4HI	GCNGC	7 cut(s)	73, 84, 249, 280, 327, 540, 642
FspBI	CTAG	2 cut(s)	27, 827
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	2 cut(s)	307, 547
GluI	GCNGC	7 cut(s)	73, 84, 249, 280, 327, 540, 642
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	47, 267
HapII	CCGG	4 cut(s)	216, 237, 445, 497
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	308, 548
Hin1I	GRCGYC	1 cut(s)	768
Hin1II	CATG	2 cut(s)	394, 682
Hin6I	GCGC	2 cut(s)	306, 546
HinP1I	GCGC	2 cut(s)	306, 546
HinfI	GANTC	3 cut(s)	489, 653, 702
HpaII	CCGG	4 cut(s)	216, 237, 445, 497
HphI	GGTGA	6 cut(s)	130, 175, 296, 660, 763, 824
Hpy166II	GTNNAC	2 cut(s)	262, 624
Hpy188I	TCNGA	2 cut(s)	344, 617
Hpy188III	TCNNGA	3 cut(s)	64, 294, 319
Hpy8I	GTNNAC	2 cut(s)	262, 624
Hpy99I	CGWCG	2 cut(s)	320, 348
HpyAV	CCTTC	4 cut(s)	188, 238, 438, 671
HpyCH4III	ACNGT	3 cut(s)	259, 514, 621
HpyCH4IV	ACGT	2 cut(s)	346, 768
HpyCH4V	TGCA	3 cut(s)	351, 390, 624
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 312, 335, 396, 545, 657
HpySE526I	ACGT	2 cut(s)	346, 768
Hsp92I	GRCGYC	1 cut(s)	768
Hsp92II	CATG	2 cut(s)	394, 682
HspAI	GCGC	2 cut(s)	306, 546
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	799
Lsp1109I	GCAGC	5 cut(s)	84, 260, 338, 526, 653
MaeI	CTAG	2 cut(s)	27, 827
MaeII	ACGT	2 cut(s)	346, 768
MaeIII	GTNAC	5 cut(s)	9, 284, 319, 472, 769
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	3 cut(s)	262, 409, 838
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	2 cut(s)	690, 834
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	5 cut(s)	202, 278, 328, 405, 623
Mph1103I	ATGCAT	1 cut(s)	392
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	4 cut(s)	516, 822, 833, 857
MspA1I	CMGCKG	2 cut(s)	251, 282
MspI	CCGG	4 cut(s)	216, 237, 445, 497
MspR9I	CCNGG	1 cut(s)	698
Mva1269I	GAATGC	2 cut(s)	317, 392
MvaI	CCWGG	1 cut(s)	698
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	6 cut(s)	206, 312, 335, 396, 545, 657
NaeI	GCCGGC	1 cut(s)	238
NdeII	GATC	1 cut(s)	799
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	394, 682
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	3 cut(s)	284, 319, 769
NsbI	TGCGCA	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	392
NspI	RCATGY	1 cut(s)	394
PaeI	GCATGC	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	444
PasI	CCCWGGG	1 cut(s)	697
PctI	GAATGC	2 cut(s)	317, 392
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	489, 702
PinAI	ACCGGT	2 cut(s)	215, 444
PkrI	GCNGC	7 cut(s)	74, 85, 250, 281, 328, 541, 643
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	263, 380, 457
RsaNI	GTAC	3 cut(s)	262, 379, 456
SacII	CCGCGG	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	516, 822, 833, 857
SatI	GCNGC	7 cut(s)	73, 84, 249, 280, 327, 540, 642
Sau3AI	GATC	1 cut(s)	799
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	1 cut(s)	626
SfcI	CTRYAG	1 cut(s)	510
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	690, 834
SsiI	CCGC	4 cut(s)	24, 84, 280, 282
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	27, 827
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	3 cut(s)	259, 514, 621
TaiI	ACGT	2 cut(s)	349, 771
TaqI	TCGA	1 cut(s)	404
TasI	AATT	2 cut(s)	690, 834
TauI	GCSGC	2 cut(s)	86, 282
TfiI	GAWTC	2 cut(s)	489, 702
Tru1I	TTAA	4 cut(s)	516, 822, 833, 857
Tru9I	TTAA	4 cut(s)	516, 822, 833, 857
TscAI	CASTG	3 cut(s)	82, 110, 626
TseFI	GTSAC	3 cut(s)	284, 319, 769
TseI	GCWGC	5 cut(s)	72, 248, 326, 539, 641
Tsp45I	GTSAC	3 cut(s)	284, 319, 769
TspDTI	ATGAA	2 cut(s)	89, 481
TspGWI	ACGGA	2 cut(s)	347, 805
TspRI	CASTG	3 cut(s)	82, 110, 626
VneI	GTGCAC	1 cut(s)	622
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	2 cut(s)	27, 827
ZraI	GACGTC	1 cut(s)	769
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.