Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Reverse (-)

92478370 .. 92478922

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTCCCGAGTATGCAATGGAGGGACTATTTTCTGTAAAATCTGATGTTTTCAGCTTTGGAGTAGTCTTGATTGAGATTATAAGTGGGAAAAAGAATAGTGGGTTCTACCTCACGGAACATGCCAAGACGCTCGTTGAATACGCATGGACACTATGGAAGGATGGAAAAGGGTCGGAGTTTGTGGAACCTTTGTTGATGGAATGTTGCCCGAAAGCAGACGTTTTGAAATACTTGCAGATTGCGCTTTTATGTGTCCAGGAAGACCCTGAAGAAAGACCAACAATGTCAGCTGTGGTTGTGTTGCTGGGAAATGATGACTCAATTGGTCTTCCTGAACCAAACAAACCAGCCATATTTGCAATAGGTAGAGTTGCTCCAACAAACGAATCTACACATACCGCTAATCCTACTTCAAATCAGCTCACTCTTTCCATCATATCACCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

150

Amino Acids

16.43

Weight (kDa)

4.78

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 101	1.4e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AciI	CCGC	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	140, 229, 417
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	448
AluBI	AGCT	3 cut(s)	57, 293, 424
AluI	AGCT	3 cut(s)	57, 293, 424
Ama87I	CYCGRG	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	270, 323
BccI	CCATC	3 cut(s)	158, 193, 443
BciT130I	CCWGG	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	6, 189
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	270, 323
BsaJI	CCNNGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	8
BspACI	CCGC	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	6, 189
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 359
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	270, 323
BtsCI	GGATG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	247
CseI	GACGC	1 cut(s)	139
CviAII	CATG	2 cut(s)	122, 147
CviJI	RGCY	5 cut(s)	5, 57, 293, 353, 424
CviKI_1	RGCY	5 cut(s)	5, 57, 293, 353, 424
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	125, 150
FaiI	YATR	9 cut(s)	15, 83, 123, 148, 157, 253, 356, 399, 440
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	121, 146
FokI	GGATG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	311
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	125, 150
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	320, 389
HphI	GGTGA	1 cut(s)	435
Hpy188I	TCNGA	2 cut(s)	46, 178
Hpy188III	TCNNGA	3 cut(s)	8, 70, 335
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	17, 238, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 359
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	125, 150
HspAI	GCGC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	10, 382
LpnPI	CCDG	6 cut(s)	245, 272, 282, 293, 348, 363
MaeII	ACGT	1 cut(s)	222
MboII	GAAGA	3 cut(s)	275, 284, 323
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	156, 404
MnlI	CCTC	3 cut(s)	16, 122, 441
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	244, 359
NlaIII	CATG	2 cut(s)	125, 150
NlaIV	GGNNCC	2 cut(s)	6, 189
NspI	RCATGY	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	389
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	6, 189
PvuII	CAGCTG	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	448
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	8 cut(s)	59, 114, 193, 225, 295, 370, 426, 452
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	225
TasI	AATT	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.