Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

34383730 .. 34384506

Gene Structure 777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGATCCTCTATTTTCTTTACAGGCTCACCTCGCTTTGCTTGAGCAGTACTGTAGCGTATGGTAAATACCTCCACCATTTCTGCCCAAACACCACCACTTTCACCGCAAAATCCTCCTTCCAACCCCATCGCGATCAACTGCTGCGGACCCTTGTCTCTAACGCCACCCGTGACAATGGCTTTTACTATGCCTCTGCTGGCGGCCAAATCTCAAACGAGACCGTCAACGGACTCTTCCTCTGCCGCGGTGACCTGTCCAAAGATGCTTGCAGTGACTGCTTATTCGCTGTAGCCTCTGATGTTGTGAAACGCTGCCCGATCGAGAAAAAGGCTATTATATGGTATGACTACTGCATGATACGCTACTCTAACTATTCATTCTTTTCTATTGATGAGGACTCGCCTTTCCACTTCAAGTGGAACTGGAACGAGGAGAATGTTAGGCAGGAGGGGGATGCATTTGAAGCATCCTTTAACTACGTAGTGGGAAATACTATGAAGCTTTTAGTACAACAGGTTGCCAGCGCCACAAAAAAGTTTGCGACCAAAGAATCGTACACCAAAATATTATTTGGACAGCCGTTCTACAGCCTTGGACAGTGCACGCAGGATCTGTCCACTGCAGATTGCAATAGCTGTCTTACTAGAGCCACAGAAAACCTTCAGAGTATGAATGCTACAGGAAAACAAGGGGCGATTCTTCTATCACCAAGTTGTAATATGAGGTTCGATTTGGAACCCTTTTACACCGCTCTACCTCCGCCCCCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

258

Amino Acids

29.1

Weight (kDa)

6.86

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	29 - 126	4.9e-24	Salt stress response/antifungal
Stress-antifung	PF01657	148 - 245	2.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	755
AccII	CGCG	2 cut(s)	135, 249
AciI	CCGC	7 cut(s)	108, 148, 204, 247, 249, 753, 764
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	3 cut(s)	52, 513, 560
AgsI	TTSAA	2 cut(s)	418, 467
AluBI	AGCT	2 cut(s)	505, 639
AluI	AGCT	2 cut(s)	505, 639
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	2 cut(s)	163, 215
Alw44I	GTGCAC	1 cut(s)	604
AlwI	GGATC	1 cut(s)	621
AlwNI	CAGNNNCTG	2 cut(s)	279, 616
AoxI	GGCC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	145, 315
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	4 cut(s)	22, 97, 263, 702
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	2 cut(s)	132, 302
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	163, 215
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	5 cut(s)	54, 291, 589, 624, 681
BfoI	RGCGCY	1 cut(s)	531
BisI	GCNGC	4 cut(s)	146, 205, 247, 316
BlsI	GCNGC	4 cut(s)	147, 206, 248, 317
BmcAI	AGTACT	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	152, 741
BmsI	GCATC	3 cut(s)	256, 448, 479
BoxI	GACNNNNGTC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	247, 595
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	247, 595
BseGI	GGATG	2 cut(s)	463, 470
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	132, 302
Bsh1236I	CGCG	2 cut(s)	135, 249
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	608
BsmAI	GTCTC	2 cut(s)	163, 215
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	6, 136, 321, 613
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	7 cut(s)	108, 148, 204, 247, 249, 753, 764
BspANI	GGCC	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	135, 249
BspLI	GGNNCC	2 cut(s)	152, 741
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	247, 595
BssMI	GATC	4 cut(s)	6, 136, 321, 613
BssT1I	CCWWGG	1 cut(s)	595
Bst4CI	ACNGT	3 cut(s)	55, 226, 603
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	202, 271, 526, 608
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	463, 470
BstFNI	CGCG	2 cut(s)	135, 249
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	9, 139, 324, 616
BstMAI	GTCTC	2 cut(s)	163, 215
BstMBI	GATC	4 cut(s)	6, 136, 321, 613
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 279, 363, 467
BstPAI	GACNNNNGTC	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	251
BstSFI	CTRYAG	5 cut(s)	54, 291, 589, 624, 681
BstSLI	GKGCMC	1 cut(s)	608
BstSNI	TACGTA	1 cut(s)	484
BstUI	CGCG	2 cut(s)	135, 249
BstV1I	GCAGC	2 cut(s)	132, 302
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	463, 470
BtsI	GCAGTG	2 cut(s)	280, 621
BtsIMutI	CAGTG	3 cut(s)	280, 608, 621
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	4 cut(s)	202, 271, 526, 608
CaiI	CAGNNNCTG	2 cut(s)	279, 616
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	150
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	51, 512, 559
CviAII	CATG	1 cut(s)	358
CviQI	GTAC	3 cut(s)	51, 512, 559
DpnI	GATC	4 cut(s)	8, 138, 323, 615
DpnII	GATC	4 cut(s)	6, 136, 321, 613
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	753
Eco105I	TACGTA	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	650
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	1 cut(s)	361
FaiI	YATR	9 cut(s)	63, 192, 341, 343, 348, 359, 500, 674, 725
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	146, 205, 247, 316
FokI	GGATG	2 cut(s)	457, 470
Fsp4HI	GCNGC	4 cut(s)	146, 205, 247, 316
FspBI	CTAG	1 cut(s)	648
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	4 cut(s)	146, 205, 247, 316
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	4 cut(s)	234, 401, 554, 700
HphI	GGTGA	4 cut(s)	22, 97, 263, 702
Hpy166II	GTNNAC	4 cut(s)	229, 561, 606, 621
Hpy188I	TCNGA	2 cut(s)	301, 669
Hpy188III	TCNNGA	2 cut(s)	134, 325
Hpy8I	GTNNAC	4 cut(s)	229, 561, 606, 621
HpyAV	CCTTC	2 cut(s)	130, 674
HpyCH4III	ACNGT	3 cut(s)	55, 226, 603
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	273, 357, 461, 606, 626, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 279, 363, 467
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	6, 136, 321, 613
LpnPI	CCDG	9 cut(s)	10, 186, 269, 412, 434, 503, 538, 596, 669
Lsp1109I	GCAGC	2 cut(s)	132, 302
LweI	GCATC	3 cut(s)	256, 448, 479
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	3 cut(s)	173, 251, 275
MalI	GATC	4 cut(s)	8, 138, 323, 615
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	4 cut(s)	6, 136, 321, 613
MboII	GAAGA	2 cut(s)	229, 695
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	608
MlyI	GAGTC	2 cut(s)	228, 395
MmeI	TCCRAC	1 cut(s)	148
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	682
MvnI	CGCG	2 cut(s)	135, 249
MwoI	GCNNNNNNNGC	4 cut(s)	34, 279, 363, 467
NdeII	GATC	4 cut(s)	6, 136, 321, 613
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	2 cut(s)	152, 741
NmuCI	GTSAC	3 cut(s)	173, 251, 275
NruI	TCGCGA	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	463
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	554, 700
PkrI	GCNGC	4 cut(s)	147, 206, 248, 317
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	2 cut(s)	228, 395
PpsI	GAGTC	2 cut(s)	228, 395
Ppu21I	YACGTR	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	155
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	152, 741
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	2 cut(s)	279, 616
PsuI	RGATCY	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	324
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	3 cut(s)	52, 513, 560
RsaNI	GTAC	3 cut(s)	51, 512, 559
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	146, 205, 247, 316
Sau3AI	GATC	4 cut(s)	6, 136, 321, 613
Sau96I	GGNCC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	228, 395
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	256, 448, 479
SfcI	CTRYAG	5 cut(s)	54, 291, 589, 624, 681
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SnaBI	TACGTA	1 cut(s)	484
SsiI	CCGC	7 cut(s)	108, 148, 204, 247, 249, 753, 764
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	1 cut(s)	648
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	55, 226, 603
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	5, 324, 732
TatI	WGTACW	2 cut(s)	50, 511
TauI	GCSGC	2 cut(s)	207, 249
TfiI	GAWTC	2 cut(s)	554, 700
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	3 cut(s)	280, 608, 628
TseFI	GTSAC	3 cut(s)	173, 251, 275
TseI	GCWGC	2 cut(s)	145, 315
Tsp45I	GTSAC	3 cut(s)	173, 251, 275
TspDTI	ATGAA	3 cut(s)	369, 515, 689
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	280, 608, 628
VneI	GTGCAC	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	648
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.