RLG00000018618

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
32799962 .. 32802413
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018618

Sequence Viewer

Length: 864 bp
ATGAATGGTTTATTACAAAAGGTTACCAGTGCCACTAAAAAGTTTGTGACCCAAGAATCGAACATCACAGGGTCAAATGGAAAGCTGATCTACAGCCTTGGACAGTGCAGTGAGTGCACGCAAGATCTGTCCACTACAGATTGCAATAGCTGTCTTAGTAGAGCCATAGCAAACATTCCAAGAATGACTGCGCCAGTAGAAGAGGCTCTACCTCCTGCGCCAGTTACACTTGGAGCTTGTCTTGTCATTGCTAGTATTCTTGCTCCTGTTGCTCTGTGTGTGATAGTTGTGGTTCTGGCCGGATGCTATTTTGGCAACAGACTCAAAAGAGCCAAACTACAAAAGAACAAAGCGGGAAATGATATAACGTCCACGATTGAGTCCGTGCAATTTGACTTGGGAACCATCGAAGCGGCCGCAAAGAAGTTTTCTGAAATAGCAGTGAAGAGACTGTCAAAAAGTTCCGGCCAAGGTGTACGAGAATTAAAGAATGAGGTTCTATTGGTTGCCAAGCTTCAACATCGAAATCTTGTCAGGCTTCTGGGATTTTGCTTGGAAGGAGAAGAGACCATACTTGTCTATGAATATGTACCCAACAAAAGTCTTGATCATTTTCTTTTTGAATCCAAAGGACGAGAACAGCTAGAGTGGTCGAGACGTAACGCGATTATAGGAGGGATCGCTGGAGGACTTGTATATCTTCATGAAGATTCTAGGCTTAGAGTCATTCATCGTGATTTGAAAGCTAGCAATATCCTGCTAGATGCCAATATGAATCCTAAAATTTCAGATTTTGGGATGGCAAGAATGTTTGGAATTGATGTTCAAACTCAAGGAAGCACCAAAAGAATTGTCGGTACTTAG

Protein Analysis

288

Amino Acids

31.27

Weight (kDa)

9.08

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 137 - 271 7.8e-28 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 142 - 276 9.7e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000699)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61750
fragaria_vesca FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa Rorug06G0063800
rosa_samantha Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 665
AciI CCGC 3 cut(s) 353, 413, 417
AclWI GGATC 1 cut(s) 686
AcoI YGGCCR 3 cut(s) 297, 414, 466
AcsI RAATTY 1 cut(s) 783
AfaI GTAC 3 cut(s) 477, 591, 859
AgsI TTSAA 4 cut(s) 518, 623, 742, 827
AloI GAACNNNNNNTCC 2 cut(s) 807, 839
AluBI AGCT 6 cut(s) 85, 150, 236, 514, 643, 746
AluI AGCT 6 cut(s) 85, 150, 236, 514, 643, 746
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 3 cut(s) 442, 560, 649
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 1 cut(s) 686
AoxI GGCC 3 cut(s) 297, 414, 466
ApaLI GTGCAC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 783
ArsI GACNNNNNNTTYG 1 cut(s) 837
AspLEI GCGC 2 cut(s) 193, 220
AsuNHI GCTAGC 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 119
BarI GAAGNNNNNNTAC 4 cut(s) 192, 224, 555, 587
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 2 cut(s) 413, 793
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 3 cut(s) 442, 560, 649
BfaI CTAG 5 cut(s) 252, 644, 714, 747, 761
BfmI CTRYAG 2 cut(s) 91, 135
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 414, 417
BlsI GCNGC 2 cut(s) 415, 418
BmiI GGNNCC 1 cut(s) 403
BmsI GCATC 2 cut(s) 293, 754
BmtI GCTAGC 1 cut(s) 750
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 97, 469
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bse1I ACTGG 3 cut(s) 27, 194, 221
Bse3DI GCAATG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 97, 469
BseGI GGATG 2 cut(s) 308, 804
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 3 cut(s) 27, 194, 221
BseSI GKGCMC 1 cut(s) 119
BseX3I CGGCCG 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 665
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 3 cut(s) 299, 416, 468
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 300, 465
BsmAI GTCTC 3 cut(s) 442, 560, 649
BsmBI CGTCTC 1 cut(s) 649
BsnI GGCC 3 cut(s) 299, 416, 468
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 87, 124, 607, 678
BspACI CCGC 3 cut(s) 353, 413, 417
BspANI GGCC 3 cut(s) 299, 416, 468
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 3 cut(s) 27, 194, 221
BssECI CCNNGG 2 cut(s) 97, 469
BssMI GATC 4 cut(s) 87, 124, 607, 678
BssT1I CCWWGG 2 cut(s) 97, 469
Bst4CI ACNGT 2 cut(s) 105, 453
Bst6I CTCTTC 3 cut(s) 195, 440, 558
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 119, 748
BstDEI CTNAG 3 cut(s) 155, 719, 861
BstEII GGTNACC 1 cut(s) 22
BstF5I GGATG 2 cut(s) 308, 804
BstFNI CGCG 1 cut(s) 665
BstHHI GCGC 2 cut(s) 193, 220
BstKTI GATC 4 cut(s) 90, 127, 610, 681
BstMAI GTCTC 3 cut(s) 442, 560, 649
BstMBI GATC 4 cut(s) 87, 124, 607, 678
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 114, 269, 312
BstPI GGTNACC 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 91, 135
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 414
BsuRI GGCC 3 cut(s) 299, 416, 468
BtsCI GGATG 2 cut(s) 308, 804
BtsI GCAGTG 2 cut(s) 115, 447
BtsIMutI CAGTG 4 cut(s) 34, 110, 115, 447
Cac8I GCNNGC 2 cut(s) 119, 748
CciI TCATGA 1 cut(s) 703
CciNI GCGGCCGC 1 cut(s) 414
CfoI GCGC 2 cut(s) 193, 220
Csp6I GTAC 3 cut(s) 476, 590, 858
CviAII CATG 1 cut(s) 704
CviQI GTAC 3 cut(s) 476, 590, 858
DdeI CTNAG 3 cut(s) 155, 719, 861
DpnI GATC 4 cut(s) 89, 126, 609, 680
DpnII GATC 4 cut(s) 87, 124, 607, 678
EaeI YGGCCR 3 cut(s) 297, 414, 466
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 3 cut(s) 195, 440, 558
EarI CTCTTC 3 cut(s) 195, 440, 558
EclXI CGGCCG 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 97, 469
Eco31I GGTCTC 1 cut(s) 560
Eco52I CGGCCG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 97, 469
ErhI CCWWGG 2 cut(s) 97, 469
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 1 cut(s) 707
FaiI YATR 9 cut(s) 167, 365, 572, 582, 588, 671, 697, 705, 773
FatI CATG 1 cut(s) 703
FauI CCCGC 1 cut(s) 346
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 2 cut(s) 414, 417
FokI GGATG 2 cut(s) 315, 811
Fsp4HI GCNGC 2 cut(s) 414, 417
FspBI CTAG 5 cut(s) 252, 644, 714, 747, 761
GlaI GCGC 2 cut(s) 192, 219
GluI GCNGC 2 cut(s) 414, 417
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 3 cut(s) 299, 416, 468
HapII CCGG 2 cut(s) 300, 465
HhaI GCGC 2 cut(s) 193, 220
Hin1II CATG 1 cut(s) 707
Hin6I GCGC 2 cut(s) 191, 218
HinP1I GCGC 2 cut(s) 191, 218
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 7 cut(s) 56, 321, 380, 623, 710, 723, 775
HpaII CCGG 2 cut(s) 300, 465
Hpy166II GTNNAC 4 cut(s) 117, 132, 372, 476
Hpy188I TCNGA 2 cut(s) 433, 790
Hpy188III TCNNGA 4 cut(s) 605, 654, 704, 734
Hpy8I GTNNAC 4 cut(s) 117, 132, 372, 476
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 2 cut(s) 105, 453
HpyCH4IV ACGT 2 cut(s) 368, 658
HpyCH4V TGCA 4 cut(s) 108, 117, 144, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 269, 312
HpyF3I CTNAG 3 cut(s) 155, 719, 861
HpySE526I ACGT 2 cut(s) 368, 658
Hsp92II CATG 1 cut(s) 707
HspAI GCGC 2 cut(s) 191, 218
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 4 cut(s) 87, 124, 607, 678
LmnI GCTCC 2 cut(s) 233, 268
LweI GCATC 2 cut(s) 293, 754
MaeI CTAG 5 cut(s) 252, 644, 714, 747, 761
MaeII ACGT 2 cut(s) 368, 658
MaeIII GTNAC 4 cut(s) 22, 46, 223, 659
MalI GATC 4 cut(s) 89, 126, 609, 680
MboI GATC 4 cut(s) 87, 124, 607, 678
MboII GAAGA 5 cut(s) 212, 457, 575, 692, 719
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 5 cut(s) 389, 482, 783, 816, 849
MlyI GAGTC 3 cut(s) 315, 389, 732
MnlI CCTC 5 cut(s) 196, 222, 487, 668, 680
MseI TTAA 1 cut(s) 485
MspI CCGG 2 cut(s) 300, 465
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 3 cut(s) 114, 269, 312
NdeII GATC 4 cut(s) 87, 124, 607, 678
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 1 cut(s) 707
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 46
NotI GCGGCCGC 1 cut(s) 414
PagI TCATGA 1 cut(s) 703
PfeI GAWTC 4 cut(s) 56, 623, 710, 775
PkrI GCNGC 2 cut(s) 415, 418
PleI GAGTC 3 cut(s) 315, 388, 731
PpsI GAGTC 3 cut(s) 315, 388, 731
PspEI GGTNACC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 403
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 3 cut(s) 477, 591, 859
RsaNI GTAC 3 cut(s) 476, 590, 858
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 2 cut(s) 414, 417
Sau3AI GATC 4 cut(s) 87, 124, 607, 678
SchI GAGTC 3 cut(s) 315, 389, 732
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 2 cut(s) 293, 754
SfcI CTRYAG 2 cut(s) 91, 135
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
Sse9I AATT 5 cut(s) 389, 482, 783, 816, 849
SsiI CCGC 3 cut(s) 353, 413, 417
SspMI CTAG 5 cut(s) 252, 644, 714, 747, 761
StyI CCWWGG 2 cut(s) 97, 469
TaaI ACNGT 2 cut(s) 105, 453
TaiI ACGT 2 cut(s) 371, 661
TaqI TCGA 4 cut(s) 59, 408, 523, 653
TasI AATT 5 cut(s) 389, 482, 783, 816, 849
TauI GCSGC 2 cut(s) 416, 419
TfiI GAWTC 4 cut(s) 56, 623, 710, 775
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 4 cut(s) 34, 110, 115, 447
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 6 cut(s) 17, 597, 692, 719, 720, 788
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 4 cut(s) 34, 110, 115, 447
VneI GTGCAC 1 cut(s) 115
XapI RAATTY 1 cut(s) 783
XspI CTAG 5 cut(s) 252, 644, 714, 747, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.