Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000699

Physical Location & Seq

Genomic Coordinates Forward (+)

20782378 .. 20783846

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGACGCACAATGCCCAACCACAACAAAACAGTATTAACATCACCATCGAGGCCTTGCAATTTGACTTGGCAACTATCCAGATTGCGACAAATAAATTTTCTAGCGAAAATAAGTTAGGCCAAGGCGGTTTTGGTGAAGTTTTCAAGGGAACACTTGATAATGGACAAGAAATTGCTGTGAAGAGGTTGTCAAAATGCTCTGGACAAGGAGTACAAGAGTTTGTGAATGAGGTTGTAATGGTAGCAAAGCTTCAACATAGGAATCTCGTAAAGCTTCTAGGGTTTTGCTTGCAAGGAGAAGAAACACTACTTGTCTATGAATACATGCCCAACAAAAGTCTTGATTATTTTCTATTTGATCCAATGAAACGACAACAATTGGATTGGTTGAGACGTTGCATGATCATTGGAGGAATTGCTCGAGGAATTCTATATCTCCATGAAGATTCCAGGCTTAGAGTTATACATCGCGATTTGAAAGCTAGCAATATTTTGTTAGATGGCAATATGAATCCAAAAGTATCAGATTTTGGGATGGCAAAAATGTTTGGAGTGGATGATCAAACTCAAGGAAACACAAGAAGAATTGTAGGCACTTATGGTTACATGGCTCCGGAATATGCTATGGAAGGATTGTATTCCATAAAATCTGATGTCTTCAGCTTCGGAATACTCTTGCTTGAAATTGTAACTGGACGAAGAAACTTTTTAGGGTTTCATCTTGAAAATTCTGCACCTACTCTTCTAGCATATGCTTGGCAATTATGGAATGAAGGGAAGGGCACGGAGCTGATGGATCCATTGTTGAAAGCTTCATGCAGTCCAGATGACTTTCGGAGATACATCCAAATTGGGTTATTGTGTTGTCAAGAAGACGCAAACAATAGGCCAACCATGTCGTCGGTTGTTGAAATGTTGAAAACTGAAACTATCAAGCTTTCGAAACCTGAACGAGCTGCCTTCTTATTTACAGGAACTAATCACCATGATCAAATAAGTGCTCAAAGCAGTTCTGCAAATGGTTTGACAATTTCTGATGATGGACCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

6.19

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 304	1.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 306	6.1e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61750
fragaria_vesca	FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754 FvH4_3g02754
malus_domestica	MD02G1101300.v1.1 MD05G1031700.v1.1 MD05G1031800.v1.1 MD05G1032400.v1.1 MD05G1032600.v1.1 MD05G1337700.v1.1 MD05G1337900.v1.1 MD05G1340100.v1.1 MD05G1340400.v1.1 MD16G1096700.v1.1
prunus_persica	Prupe.4G027600_v2.0.a1 Prupe.8G039200_v2.0.a1
pyrus_communis	pycom05g02310 pycom05g02330 pycom05g02340 pycom05g30920
rosa_chinensis	RchiOBHm_Chr2g0121501 RchiOBHm_Chr2g0122141 RchiOBHm_Chr5g0004191 RchiOBHm_Chr6g0265241 RchiOBHm_Chr7g0215811 RchiOBHm_Chr7g0215821 RchiOBHm_Chr7g0219681
rosa_laevigata	RLG00000002617 RLG00000018618 RLG00000018623 RLG00000031211
rosa_multiflora	Rmu_sc0000079.1_g000015 Rmu_sc0000315.1_g000072 Rmu_sc0000315.1_g000093 Rmu_sc0000547.1_g000005 Rmu_sc0000805.1_g000048 Rmu_sc0001851.1_g000024 Rmu_sc0004379.1_g000017 Rmu_sc0004574.1_g000057 Rmu_sc0004689.1_g000004 Rmu_sc0004964.1_g000019 Rmu_sc0007799.1_g000001 Rmu_sc0007868.1_g000012 Rmu_ssc0000359.1_g000013
rosa_roxburghii	Rroxscaffold_175G00432180 Rroxscaffold_1G00071500 Rroxscaffold_1G00071530 Rroxscaffold_1G00071780 Rroxscaffold_2G00122400 Rroxscaffold_2G00122420
rosa_rugosa	Rorug06G0063800
rosa_samantha	Rh2AG290300 Rh2BG301100 Rh2CG279800 Rh5CG038400 Rh5CG040800 Rh5DG036900 Rh6CG182400 Rh6DG173600 Rh7CG314200 Rh7DG297100
rosa_wichuraiana	Rw0G021200 Rw0G021210 Rw2G023270 Rw2G023510 Rw5G003650 Rw5G030050 Rw6G011890 Rw7G024980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	471
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	353, 791, 804
AcsI	RAATTY	3 cut(s)	95, 426, 727
AcuI	CTGAAG	1 cut(s)	643
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	8 cut(s)	145, 254, 478, 683, 725, 808, 911, 919
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	8 cut(s)	250, 274, 482, 663, 790, 812, 937, 956
AluI	AGCT	8 cut(s)	250, 274, 482, 663, 790, 812, 937, 956
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	3 cut(s)	353, 791, 804
Ama87I	CYCGRG	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	3 cut(s)	51, 118, 887
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	3 cut(s)	95, 426, 727
AspS9I	GGNCC	1 cut(s)	1043
AsuHPI	GGTGA	3 cut(s)	34, 146, 974
AsuII	TTCGAA	1 cut(s)	941
AsuNHI	GCTAGC	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	1043
BaeGI	GKGCMC	1 cut(s)	785
BamHI	GGATCC	1 cut(s)	796
BarI	GAAGNNNNNNTAC	4 cut(s)	234, 266, 291, 323
BbsI	GAAGAC	2 cut(s)	649, 879
Bbv12I	GWGCWC	1 cut(s)	1003
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	5 cut(s)	53, 494, 529, 787, 1034
BciT130I	CCWGG	1 cut(s)	451
BclI	TGATCA	3 cut(s)	402, 559, 988
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	4 cut(s)	102, 278, 483, 746
BisI	GCNGC	1 cut(s)	957
BlsI	GCNGC	1 cut(s)	958
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	1043
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	1043
BmiI	GGNNCC	2 cut(s)	612, 798
BmrFI	CCNGG	1 cut(s)	451
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	649, 879
Bpu14I	TTCGAA	1 cut(s)	941
BpuEI	CTTGAG	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	697
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	540, 562, 843
BseNI	ACTGG	1 cut(s)	697
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	1 cut(s)	943
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	53, 120, 889
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	385
BsmBI	CGTCTC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	53, 120, 889
BsoBI	CYCGRG	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	941
Bsp1286I	GDGCHC	2 cut(s)	785, 1003
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	5 cut(s)	358, 402, 559, 796, 988
Bsp68I	TCGCGA	1 cut(s)	471
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	53, 120, 889
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	612, 798
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	353, 791, 804
BspT104I	TTCGAA	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	697
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	358, 402, 559, 796, 988
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	176, 747
BstBI	TTCGAA	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	290, 484
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	540, 562, 843
BstFNI	CGCG	1 cut(s)	471
BstKTI	GATC	5 cut(s)	361, 405, 562, 799, 991
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	5 cut(s)	358, 402, 559, 796, 988
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	785
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	2 cut(s)	649, 879
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	3 cut(s)	53, 120, 889
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	540, 562, 843
BtuMI	TCGCGA	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	290, 484
Cfr13I	GGNCC	1 cut(s)	1043
CseI	GACGC	2 cut(s)	13, 884
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	7 cut(s)	325, 400, 440, 607, 816, 895, 986
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	5 cut(s)	360, 404, 561, 798, 990
DpnII	GATC	5 cut(s)	358, 402, 559, 796, 988
Eam1104I	CTCTTC	2 cut(s)	176, 747
EarI	CTCTTC	2 cut(s)	176, 747
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	1043
Eco57I	CTGAAG	1 cut(s)	643
Eco88I	CYCGRG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	7 cut(s)	328, 403, 443, 610, 819, 898, 989
FatI	CATG	7 cut(s)	324, 399, 439, 606, 815, 894, 985
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	3 cut(s)	402, 559, 988
Fnu4HI	GCNGC	1 cut(s)	957
FokI	GGATG	3 cut(s)	547, 569, 830
Fsp4HI	GCNGC	1 cut(s)	957
FspBI	CTAG	4 cut(s)	102, 278, 483, 746
GluI	GCNGC	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	53, 120, 889
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	2 cut(s)	13, 884
Hin1II	CATG	7 cut(s)	328, 403, 443, 610, 819, 898, 989
HindIII	AAGCTT	4 cut(s)	248, 272, 810, 935
HinfI	GANTC	3 cut(s)	262, 446, 511
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	3 cut(s)	34, 146, 974
Hpy188I	TCNGA	5 cut(s)	526, 652, 668, 837, 1036
Hpy188III	TCNNGA	8 cut(s)	79, 201, 341, 470, 614, 722, 824, 869
Hpy99I	CGWCG	1 cut(s)	904
HpyAV	CCTTC	4 cut(s)	623, 767, 772, 970
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	394, 1048
HpyCH4V	TGCA	6 cut(s)	58, 292, 399, 734, 819, 1016
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	2 cut(s)	394, 1048
Hsp92II	CATG	7 cut(s)	328, 403, 443, 610, 819, 898, 989
Kpn2I	TCCGGA	1 cut(s)	613
Ksp22I	TGATCA	3 cut(s)	402, 559, 988
Kzo9I	GATC	5 cut(s)	358, 402, 559, 796, 988
LmnI	GCTCC	2 cut(s)	616, 787
LpnPI	CCDG	9 cut(s)	92, 186, 436, 463, 627, 678, 837, 957, 960
Lsp1109I	GCAGC	1 cut(s)	943
MaeI	CTAG	4 cut(s)	102, 278, 483, 746
MaeII	ACGT	2 cut(s)	394, 1048
MaeIII	GTNAC	2 cut(s)	602, 688
MalI	GATC	5 cut(s)	360, 404, 561, 798, 990
MboI	GATC	5 cut(s)	358, 402, 559, 796, 988
MboII	GAAGA	8 cut(s)	193, 311, 455, 594, 649, 711, 734, 884
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	2 cut(s)	785, 1003
MnlI	CCTC	5 cut(s)	43, 177, 223, 404, 416
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	5 cut(s)	358, 402, 559, 796, 988
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	7 cut(s)	328, 403, 443, 610, 819, 898, 989
NlaIV	GGNNCC	2 cut(s)	612, 798
NruI	TCGCGA	1 cut(s)	471
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	941
PaeR7I	CTCGAG	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	262, 446, 511
PkrI	GCNGC	1 cut(s)	958
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	2 cut(s)	612, 798
PspPI	GGNCC	1 cut(s)	1043
PspXI	VCTCGAGB	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	796
RruI	TCGCGA	1 cut(s)	471
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	957
Sau3AI	GATC	5 cut(s)	358, 402, 559, 796, 988
Sau96I	GGNCC	1 cut(s)	1043
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	785, 1003
Sfr274I	CTCGAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	941
SinI	GGWCC	1 cut(s)	1043
SlaI	CTCGAG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	420, 567
SmoI	CTYRAG	2 cut(s)	420, 567
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	4 cut(s)	102, 278, 483, 746
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	397, 1051
TaqI	TCGA	3 cut(s)	48, 421, 941
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	262, 446, 511
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseI	GCWGC	1 cut(s)	956
TspDTI	ATGAA	7 cut(s)	333, 380, 456, 524, 707, 786, 804
TspGWI	ACGGA	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	1043
XapI	RAATTY	3 cut(s)	95, 426, 727
XceI	RCATGY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	420
XspI	CTAG	4 cut(s)	102, 278, 483, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.