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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1570 |
| Acc36I | ACCTGC | 1 cut(s) | 1570 |
| AccB1I | GGYRCC | 2 cut(s) | 883, 1528 |
| AccII | CGCG | 1 cut(s) | 1553 |
| AcoI | YGGCCR | 1 cut(s) | 1237 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 926, 1061, 1106, 1235, 1276, 1505, 1522, 1547, 1661 |
| AflIII | ACRYGT | 5 cut(s) | 901, 946, 1081, 1126, 1819 |
| AhlI | ACTAGT | 1 cut(s) | 1415 |
| AjnI | CCWGG | 2 cut(s) | 1660, 1701 |
| AluBI | AGCT | 2 cut(s) | 105, 1919 |
| AluI | AGCT | 2 cut(s) | 105, 1919 |
| Alw21I | GWGCWC | 4 cut(s) | 375, 651, 934, 1114 |
| Alw26I | GTCTC | 2 cut(s) | 327, 1745 |
| AoxI | GGCC | 1 cut(s) | 1237 |
| ApeKI | GCWGC | 2 cut(s) | 1832, 1916 |
| AspLEI | GCGC | 2 cut(s) | 53, 1553 |
| AspS9I | GGNCC | 1 cut(s) | 1928 |
| AsuC2I | CCSGG | 2 cut(s) | 1236, 1575 |
| AsuII | TTCGAA | 1 cut(s) | 1641 |
| AvaII | GGWCC | 1 cut(s) | 1928 |
| BanI | GGYRCC | 2 cut(s) | 883, 1528 |
| Bbv12I | GWGCWC | 4 cut(s) | 375, 651, 934, 1114 |
| BbvI | GCAGC | 2 cut(s) | 1844, 1928 |
| BceAI | ACGGC | 3 cut(s) | 1009, 1618, 1673 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1631, 1665 |
| BciT130I | CCWGG | 2 cut(s) | 1662, 1703 |
| BcnI | CCSGG | 2 cut(s) | 1236, 1575 |
| BcoDI | GTCTC | 2 cut(s) | 327, 1745 |
| BcuI | ACTAGT | 1 cut(s) | 1415 |
| BfaI | CTAG | 2 cut(s) | 1416, 1947 |
| BfmI | CTRYAG | 1 cut(s) | 1428 |
| BfuAI | ACCTGC | 1 cut(s) | 1570 |
| BisI | GCNGC | 6 cut(s) | 305, 308, 1046, 1527, 1833, 1917 |
| BlpI | GCTNAGC | 1 cut(s) | 1860 |
| BlsI | GCNGC | 6 cut(s) | 306, 309, 1047, 1528, 1834, 1918 |
| BmcAI | AGTACT | 1 cut(s) | 981 |
| Bme1390I | CCNGG | 4 cut(s) | 1236, 1575, 1662, 1703 |
| Bme18I | GGWCC | 1 cut(s) | 1928 |
| BmgT120I | GGNCC | 1 cut(s) | 1928 |
| BmiI | GGNNCC | 3 cut(s) | 885, 1530, 1782 |
| BmrFI | CCNGG | 4 cut(s) | 1236, 1575, 1662, 1703 |
| BpmI | CTGGAG | 5 cut(s) | 960, 1140, 1230, 1320, 1854 |
| Bpu10I | CCTNAGC | 3 cut(s) | 369, 534, 645 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1860 |
| Bpu14I | TTCGAA | 1 cut(s) | 1641 |
| BpuMI | CCSGG | 2 cut(s) | 1236, 1575 |
| BsaAI | YACGTR | 1 cut(s) | 1129 |
| BsaI | GGTCTC | 1 cut(s) | 1745 |
| BsaJI | CCNNGG | 3 cut(s) | 1661, 1701, 1702 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 926, 1061, 1106, 1235, 1276, 1505, 1522, 1547, 1661 |
| Bse1I | ACTGG | 5 cut(s) | 977, 1157, 1247, 1337, 1871 |
| BseBI | CCWGG | 2 cut(s) | 1662, 1703 |
| BseDI | CCNNGG | 3 cut(s) | 1661, 1701, 1702 |
| BseGI | GGATG | 5 cut(s) | 119, 154, 835, 952, 1087 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 926, 1061, 1106, 1235, 1276, 1505, 1522, 1547, 1661 |
| BseMII | CTCAG | 6 cut(s) | 272, 360, 636, 864, 1851, 1911 |
| BseNI | ACTGG | 5 cut(s) | 977, 1157, 1247, 1337, 1871 |
| BseXI | GCAGC | 2 cut(s) | 1844, 1928 |
| BseYI | CCCAGC | 3 cut(s) | 965, 1145, 1325 |
| BsgI | GTGCAG | 2 cut(s) | 1770, 1935 |
| Bsh1236I | CGCG | 1 cut(s) | 1553 |
| BshFI | GGCC | 1 cut(s) | 1239 |
| BshNI | GGYRCC | 2 cut(s) | 883, 1528 |
| BsiHKAI | GWGCWC | 4 cut(s) | 375, 651, 934, 1114 |
| BsiSI | CCGG | 2 cut(s) | 1236, 1575 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 926, 1061, 1106, 1235, 1276, 1505, 1522, 1547, 1661 |
| BsmAI | GTCTC | 2 cut(s) | 327, 1745 |
| BsmBI | CGTCTC | 1 cut(s) | 327 |
| BsmI | GAATGC | 2 cut(s) | 1565, 1712 |
| BsnI | GGCC | 1 cut(s) | 1239 |
| Bso31I | GGTCTC | 1 cut(s) | 1745 |
| Bsp119I | TTCGAA | 1 cut(s) | 1641 |
| Bsp1286I | GDGCHC | 4 cut(s) | 375, 651, 934, 1114 |
| Bsp1407I | TGTACA | 2 cut(s) | 949, 1084 |
| Bsp143I | GATC | 1 cut(s) | 1923 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1860 |
| BspANI | GGCC | 1 cut(s) | 1239 |
| BspCNI | CTCAG | 6 cut(s) | 271, 361, 637, 863, 1852, 1912 |
| BspFNI | CGCG | 1 cut(s) | 1553 |
| BspLI | GGNNCC | 3 cut(s) | 885, 1530, 1782 |
| BspMI | ACCTGC | 1 cut(s) | 1570 |
| BspT104I | TTCGAA | 1 cut(s) | 1641 |
| BspT107I | GGYRCC | 2 cut(s) | 883, 1528 |
| BspTNI | GGTCTC | 1 cut(s) | 1745 |
| BsrGI | TGTACA | 2 cut(s) | 949, 1084 |
| BsrI | ACTGG | 5 cut(s) | 977, 1157, 1247, 1337, 1871 |
| BssECI | CCNNGG | 3 cut(s) | 1661, 1701, 1702 |
| BssMI | GATC | 1 cut(s) | 1923 |
| Bst2UI | CCWGG | 2 cut(s) | 1662, 1703 |
| Bst4CI | ACNGT | 3 cut(s) | 204, 321, 1681 |
| BstAUI | TGTACA | 2 cut(s) | 949, 1084 |
| BstBAI | YACGTR | 1 cut(s) | 1129 |
| BstBI | TTCGAA | 1 cut(s) | 1641 |
| BstDEI | CTNAG | 7 cut(s) | 258, 369, 534, 645, 850, 1860, 1920 |
| BstEII | GGTNACC | 1 cut(s) | 5 |
| BstF5I | GGATG | 5 cut(s) | 119, 154, 835, 952, 1087 |
| BstFNI | CGCG | 1 cut(s) | 1553 |
| BstHHI | GCGC | 2 cut(s) | 53, 1553 |
| BstKTI | GATC | 1 cut(s) | 1926 |
| BstMAI | GTCTC | 2 cut(s) | 327, 1745 |
| BstMBI | GATC | 1 cut(s) | 1923 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1030, 1051, 1231, 1300, 1321, 1390 |
| BstNI | CCWGG | 2 cut(s) | 1662, 1703 |
| BstNSI | RCATGY | 3 cut(s) | 905, 950, 1085 |
| BstPI | GGTNACC | 1 cut(s) | 5 |
| BstSCI | CCNGG | 4 cut(s) | 1234, 1573, 1660, 1701 |
| BstSFI | CTRYAG | 1 cut(s) | 1428 |
| BstUI | CGCG | 1 cut(s) | 1553 |
| BstV1I | GCAGC | 2 cut(s) | 1844, 1928 |
| BsuRI | GGCC | 1 cut(s) | 1239 |
| BtgZI | GCGATG | 3 cut(s) | 1026, 1206, 1296 |
| BtsCI | GGATG | 5 cut(s) | 119, 154, 835, 952, 1087 |
| BveI | ACCTGC | 1 cut(s) | 1570 |
| CfoI | GCGC | 2 cut(s) | 53, 1553 |
| Cfr13I | GGNCC | 1 cut(s) | 1928 |
| DdeI | CTNAG | 7 cut(s) | 258, 369, 534, 645, 850, 1860, 1920 |
| DpnI | GATC | 1 cut(s) | 1925 |
| DpnII | GATC | 1 cut(s) | 1923 |
| EaeI | YGGCCR | 1 cut(s) | 1237 |
| EciI | GGCGGA | 2 cut(s) | 183, 498 |
| Eco31I | GGTCTC | 1 cut(s) | 1745 |
| Eco47I | GGWCC | 1 cut(s) | 1928 |
| Eco91I | GGTNACC | 1 cut(s) | 5 |
| EcoO65I | GGTNACC | 1 cut(s) | 5 |
| EcoRII | CCWGG | 2 cut(s) | 1660, 1701 |
| Esp3I | CGTCTC | 1 cut(s) | 327 |
| FauI | CCCGC | 4 cut(s) | 1038, 1218, 1308, 1398 |
| Fnu4HI | GCNGC | 6 cut(s) | 305, 308, 1046, 1527, 1833, 1917 |
| FokI | GGATG | 5 cut(s) | 106, 141, 822, 939, 1074 |
| Fsp4HI | GCNGC | 6 cut(s) | 305, 308, 1046, 1527, 1833, 1917 |
| FspBI | CTAG | 2 cut(s) | 1416, 1947 |
| GlaI | GCGC | 2 cut(s) | 52, 1552 |
| GluI | GCNGC | 6 cut(s) | 305, 308, 1046, 1527, 1833, 1917 |
| GsaI | CCCAGC | 3 cut(s) | 969, 1149, 1329 |
| GsuI | CTGGAG | 5 cut(s) | 960, 1140, 1230, 1320, 1854 |
| HaeIII | GGCC | 1 cut(s) | 1239 |
| HapII | CCGG | 2 cut(s) | 1236, 1575 |
| HhaI | GCGC | 2 cut(s) | 53, 1553 |
| Hin6I | GCGC | 2 cut(s) | 51, 1551 |
| HinP1I | GCGC | 2 cut(s) | 51, 1551 |
| HpaII | CCGG | 2 cut(s) | 1236, 1575 |
| Hpy166II | GTNNAC | 5 cut(s) | 295, 1132, 1162, 1252, 1342 |
| Hpy188I | TCNGA | 6 cut(s) | 246, 990, 1170, 1260, 1350, 1928 |
| Hpy8I | GTNNAC | 5 cut(s) | 295, 1132, 1162, 1252, 1342 |
| HpyAV | CCTTC | 9 cut(s) | 42, 414, 510, 558, 690, 930, 1065, 1110, 1941 |
| HpyCH4III | ACNGT | 3 cut(s) | 204, 321, 1681 |
| HpyCH4IV | ACGT | 2 cut(s) | 1128, 1819 |
| HpyCH4V | TGCA | 6 cut(s) | 1565, 1652, 1712, 1787, 1877, 1916 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1030, 1051, 1231, 1300, 1321, 1390 |
| HpyF3I | CTNAG | 7 cut(s) | 258, 369, 534, 645, 850, 1860, 1920 |
| HpySE526I | ACGT | 2 cut(s) | 1128, 1819 |
| HspAI | GCGC | 2 cut(s) | 51, 1551 |
| Kzo9I | GATC | 1 cut(s) | 1923 |
| LmnI | GCTCC | 4 cut(s) | 58, 937, 1117, 1945 |
| Lsp1109I | GCAGC | 2 cut(s) | 1844, 1928 |
| MaeI | CTAG | 2 cut(s) | 1416, 1947 |
| MaeII | ACGT | 2 cut(s) | 1128, 1819 |
| MaeIII | GTNAC | 7 cut(s) | 5, 92, 204, 261, 1494, 1511, 1961 |
| MalI | GATC | 1 cut(s) | 1925 |
| MboI | GATC | 1 cut(s) | 1923 |
| MboII | GAAGA | 9 cut(s) | 444, 720, 1708, 1774, 1777, 1780, 1820, 1823, 1826 |
| MhlI | GDGCHC | 4 cut(s) | 375, 651, 934, 1114 |
| MmeI | TCCRAC | 2 cut(s) | 842, 1819 |
| MseI | TTAA | 1 cut(s) | 1620 |
| MspA1I | CMGCKG | 1 cut(s) | 1919 |
| MspI | CCGG | 2 cut(s) | 1236, 1575 |
| MspR9I | CCNGG | 4 cut(s) | 1236, 1575, 1662, 1703 |
| Mva1269I | GAATGC | 2 cut(s) | 1565, 1712 |
| MvaI | CCWGG | 2 cut(s) | 1662, 1703 |
| MvnI | CGCG | 1 cut(s) | 1553 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1030, 1051, 1231, 1300, 1321, 1390 |
| NciI | CCSGG | 2 cut(s) | 1236, 1575 |
| NdeII | GATC | 1 cut(s) | 1923 |
| NlaIV | GGNNCC | 3 cut(s) | 885, 1530, 1782 |
| NmuCI | GTSAC | 4 cut(s) | 204, 261, 1494, 1511 |
| NspI | RCATGY | 3 cut(s) | 905, 950, 1085 |
| NspV | TTCGAA | 1 cut(s) | 1641 |
| PaqCI | CACCTGC | 1 cut(s) | 1570 |
| PasI | CCCWGGG | 1 cut(s) | 1702 |
| PciI | ACATGT | 3 cut(s) | 901, 946, 1081 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1692 |
| PctI | GAATGC | 2 cut(s) | 1565, 1712 |
| PkrI | GCNGC | 6 cut(s) | 306, 309, 1047, 1528, 1834, 1918 |
| Ppu21I | YACGTR | 1 cut(s) | 1129 |
| PscI | ACATGT | 3 cut(s) | 901, 946, 1081 |
| Psp6I | CCWGG | 2 cut(s) | 1660, 1701 |
| PspEI | GGTNACC | 1 cut(s) | 5 |
| PspFI | CCCAGC | 3 cut(s) | 965, 1145, 1325 |
| PspGI | CCWGG | 2 cut(s) | 1660, 1701 |
| PspN4I | GGNNCC | 3 cut(s) | 885, 1530, 1782 |
| PspPI | GGNCC | 1 cut(s) | 1928 |
| PvuII | CAGCTG | 1 cut(s) | 1919 |
| SaqAI | TTAA | 1 cut(s) | 1620 |
| SatI | GCNGC | 6 cut(s) | 305, 308, 1046, 1527, 1833, 1917 |
| Sau3AI | GATC | 1 cut(s) | 1923 |
| Sau96I | GGNCC | 1 cut(s) | 1928 |
| ScaI | AGTACT | 1 cut(s) | 981 |
| ScrFI | CCNGG | 4 cut(s) | 1236, 1575, 1662, 1703 |
| SduI | GDGCHC | 4 cut(s) | 375, 651, 934, 1114 |
| SfcI | CTRYAG | 1 cut(s) | 1428 |
| SfuI | TTCGAA | 1 cut(s) | 1641 |
| SinI | GGWCC | 1 cut(s) | 1928 |
| SpeI | ACTAGT | 1 cut(s) | 1415 |
| SspMI | CTAG | 2 cut(s) | 1416, 1947 |
| StyD4I | CCNGG | 4 cut(s) | 1234, 1573, 1660, 1701 |
| TaaI | ACNGT | 3 cut(s) | 204, 321, 1681 |
| TaiI | ACGT | 2 cut(s) | 1131, 1822 |
| TaqI | TCGA | 1 cut(s) | 1641 |
| TaqII | GACCGA | 1 cut(s) | 1727 |
| TatI | WGTACW | 7 cut(s) | 949, 979, 1084, 1159, 1249, 1339, 1432 |
| TauI | GCSGC | 4 cut(s) | 307, 310, 1048, 1529 |
| Tru1I | TTAA | 1 cut(s) | 1620 |
| Tru9I | TTAA | 1 cut(s) | 1620 |
| TseFI | GTSAC | 4 cut(s) | 204, 261, 1494, 1511 |
| TseI | GCWGC | 2 cut(s) | 1832, 1916 |
| Tsp45I | GTSAC | 4 cut(s) | 204, 261, 1494, 1511 |
| TspDTI | ATGAA | 1 cut(s) | 1911 |
| VpaK11BI | GGWCC | 1 cut(s) | 1928 |
| XceI | RCATGY | 3 cut(s) | 905, 950, 1085 |
| XspI | CTAG | 2 cut(s) | 1416, 1947 |
| ZrmI | AGTACT | 1 cut(s) | 981 |