pycom16g09410

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
6310261 .. 6312853
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
ATGGTTTTCAACATCTGGCAAGAAGATCAAGATCGGAATCAACGGAAATGGGGTTTAGGGTTCGGAAGAATCGGACGATTGGTTGCTAGGGTCGCTCTTCAGAGGGACGATGTTGAGCTCGTTGCTGTCAACGATCCCTTCATCACCACCGACTACATGACCTACATGTTCAAGTACGACACAGTCCATGGCGCATGGAAGCACCATGAGCTCAAGGTCAAGGACTCCAAGACCCTTCTCTTCGGTGAGAAGCCTGTCGCTGTTTTCGGAATCAGGAACCCAGAGGAGATCCCATGGGGTGAGACCGGTGCTGACTTTGTTGTTGAGTCTACCGGTGTCTTCACCGACAAGGAGAAAGCAGCTGCCCATCTCAAGGGAGGTGCAAAGAAGGTTATCATCTCTGCTCCCAGCAAGGATGCTCCCATGTTCGTTGTTGGTGTGAACGAGAAGGAATACAAGCCAGACATTCACATTCTTTCCAATGCCAGTTGCACTACCAACTGCCTTGCTCCCCTTGCCAAGGTTATCAACGACAGGTTTGGGATTGTTGAGGGTCTCATGACCACGGTGCACTCCATCACTGCCACCCAAAAGACTGTCGACGGTCCATCAATGAAGGACTGGAGAGGTGGACGTGCTGCTTCCTTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGAAAGGTGCTCCCATCTCTTAATGGAAAATTGACTGGAATGTCCTTCCGTGTGCCCACTGTTGATGTTTCCGTTGTTGACCTGACTGTCAGGCTGGAGAAGCCTGCAACCTATGAACAGATCAAGGCCGCTATCAAGGAGGAGTCTGAGGGCAAGTTGAAGGGTATCTTGGGTTACACCGAAGATGATGTTGTGTCCACCGACTTCATTGGTGACAGCAGGTCAAGCATCTTTGACGCCAAGGCTGGAATTGCATTGAACGACAAATTTGTCAAGCTCGTCTCATGGTACGACAACGAGTGGGGTTACAGTACCCGTGTGGTAGACTTGATCGTGCACGTAGCATCCACCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

348

Amino Acids

38.12

Weight (kDa)

6.67

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 20 - 117 1.3e-29 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 169 - 326 4.4e-71 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 727, 773, 956
Acc36I ACCTGC 1 cut(s) 897
AccI GTMKAC 3 cut(s) 329, 600, 1011
AciI CCGC 1 cut(s) 816
AclWI GGATC 2 cut(s) 128, 283
AcsI RAATTY 1 cut(s) 953
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 924
AfaI GTAC 3 cut(s) 176, 977, 1000
AfiI CCNNNNNNNGG 2 cut(s) 373, 520
AflIII ACRYGT 1 cut(s) 165
AgeI ACCGGT 2 cut(s) 305, 332
AgsI TTSAA 5 cut(s) 10, 172, 649, 847, 946
AhdI GACNNNNNGTC 1 cut(s) 907
AjiI CACGTC 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AluBI AGCT 5 cut(s) 118, 211, 362, 674, 964
AluI AGCT 5 cut(s) 118, 211, 362, 674, 964
Alw21I GWGCWC 5 cut(s) 120, 213, 573, 699, 1026
Alw26I GTCTC 3 cut(s) 296, 560, 973
Alw44I GTGCAC 2 cut(s) 569, 1022
AlwI GGATC 2 cut(s) 128, 283
AoxI GGCC 1 cut(s) 813
ApaLI GTGCAC 2 cut(s) 569, 1022
ApeKI GCWGC 5 cut(s) 359, 362, 638, 663, 674
ApoI RAATTY 1 cut(s) 953
AsiGI ACCGGT 2 cut(s) 305, 332
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 5 cut(s) 136, 257, 311, 334, 911
AvaII GGWCC 1 cut(s) 605
BaeGI GKGCMC 3 cut(s) 573, 744, 1026
BanII GRGCYC 2 cut(s) 120, 213
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 5 cut(s) 120, 213, 573, 699, 1026
BbvI GCAGC 5 cut(s) 349, 371, 625, 661, 675
BccI CCATC 4 cut(s) 375, 584, 616, 709
BcoDI GTCTC 3 cut(s) 296, 560, 973
BfaI CTAG 2 cut(s) 87, 660
BfuAI ACCTGC 1 cut(s) 897
BisI GCNGC 6 cut(s) 360, 363, 639, 664, 675, 816
BlsI GCNGC 6 cut(s) 361, 364, 640, 665, 676, 817
Bme18I GGWCC 1 cut(s) 605
BmeRI GACNNNNNGTC 1 cut(s) 907
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 3 cut(s) 406, 924, 1040
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 3 cut(s) 643, 690, 803
BpuEI CTTGAG 2 cut(s) 197, 356
BsaAI YACGTR 1 cut(s) 1027
BsaBI GATNNNNATC 2 cut(s) 30, 36
BsaHI GRCGYC 1 cut(s) 924
BsaI GGTCTC 2 cut(s) 296, 560
BsaJI CCNNGG 6 cut(s) 187, 293, 519, 564, 678, 927
BsaWI WCCGGW 2 cut(s) 305, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 520
Bse118I RCCGGY 2 cut(s) 305, 332
Bse1I ACTGG 4 cut(s) 486, 626, 673, 727
Bse8I GATNNNNATC 2 cut(s) 30, 36
BseDI CCNNGG 6 cut(s) 187, 293, 519, 564, 678, 927
BseGI GGATG 2 cut(s) 421, 1031
BseJI GATNNNNATC 2 cut(s) 30, 36
BseLI CCNNNNNNNGG 2 cut(s) 373, 520
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 4 cut(s) 486, 626, 673, 727
BseRI GAGGAG 2 cut(s) 299, 842
BseSI GKGCMC 3 cut(s) 573, 744, 1026
BseXI GCAGC 5 cut(s) 349, 371, 625, 661, 675
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 815
BshTI ACCGGT 2 cut(s) 305, 332
BsiHKAI GWGCWC 5 cut(s) 120, 213, 573, 699, 1026
BsiSI CCGG 2 cut(s) 306, 333
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 373, 520
BsmAI GTCTC 3 cut(s) 296, 560, 973
BsmBI CGTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 815
Bso31I GGTCTC 2 cut(s) 296, 560
Bsp1286I GDGCHC 6 cut(s) 120, 213, 573, 699, 744, 1026
Bsp143I GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
Bsp19I CCATGG 2 cut(s) 187, 293
BspACI CCGC 1 cut(s) 816
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 1 cut(s) 826
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 897
BspPI GGATC 2 cut(s) 128, 283
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 296, 560
BsrFI RCCGGY 2 cut(s) 305, 332
BsrI ACTGG 4 cut(s) 486, 626, 673, 727
BssAI RCCGGY 2 cut(s) 305, 332
BssECI CCNNGG 6 cut(s) 187, 293, 519, 564, 678, 927
BssMI GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
BssNI GRCGYC 1 cut(s) 924
BssT1I CCWWGG 5 cut(s) 187, 293, 519, 678, 927
Bst4CI ACNGT 7 cut(s) 184, 568, 598, 605, 748, 775, 998
Bst6I CTCTTC 2 cut(s) 102, 245
BstACI GRCGYC 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 1027
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 1 cut(s) 834
BstDSI CCRYGG 3 cut(s) 187, 293, 564
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 2 cut(s) 421, 1031
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 6 cut(s) 28, 34, 136, 291, 810, 1020
BstMAI GTCTC 3 cut(s) 296, 560, 973
BstMBI GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
BstMWI GCNNNNNNNGC 7 cut(s) 92, 208, 515, 680, 787, 912, 938
BstNSI RCATGY 1 cut(s) 169
BstSLI GKGCMC 3 cut(s) 573, 744, 1026
BstV1I GCAGC 5 cut(s) 349, 371, 625, 661, 675
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 815
BtgI CCRYGG 3 cut(s) 187, 293, 564
BtrI CACGTC 1 cut(s) 635
BtsCI GGATG 2 cut(s) 421, 1031
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 579, 666, 744
BveI ACCTGC 1 cut(s) 897
Cac8I GCNNGC 1 cut(s) 792
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 305, 332
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 1 cut(s) 932
Csp6I GTAC 3 cut(s) 175, 976, 999
CspAI ACCGGT 2 cut(s) 305, 332
CviAII CATG 9 cut(s) 157, 166, 188, 195, 206, 294, 424, 559, 972
CviQI GTAC 3 cut(s) 175, 976, 999
DdeI CTNAG 1 cut(s) 834
DpnI GATC 6 cut(s) 27, 33, 135, 290, 809, 1019
DpnII GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
DrdI GACNNNNNNGTC 3 cut(s) 727, 773, 956
DriI GACNNNNNGTC 1 cut(s) 907
DseDI GACNNNNNNGTC 3 cut(s) 727, 773, 956
Eam1104I CTCTTC 2 cut(s) 102, 245
Eam1105I GACNNNNNGTC 1 cut(s) 907
EarI CTCTTC 2 cut(s) 102, 245
Ecl136II GAGCTC 2 cut(s) 118, 211
Eco130I CCWWGG 5 cut(s) 187, 293, 519, 678, 927
Eco24I GRGCYC 2 cut(s) 120, 213
Eco31I GGTCTC 2 cut(s) 296, 560
Eco47I GGWCC 1 cut(s) 605
Eco53kI GAGCTC 2 cut(s) 118, 211
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 118, 211
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoT14I CCWWGG 5 cut(s) 187, 293, 519, 678, 927
EcoT38I GRGCYC 2 cut(s) 120, 213
ErhI CCWWGG 5 cut(s) 187, 293, 519, 678, 927
Esp3I CGTCTC 1 cut(s) 973
FaeI CATG 9 cut(s) 160, 169, 191, 198, 209, 297, 427, 562, 975
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 1 cut(s) 119
FatI CATG 9 cut(s) 156, 165, 187, 194, 205, 293, 423, 558, 971
FblI GTMKAC 3 cut(s) 329, 600, 1011
Fnu4HI GCNGC 6 cut(s) 360, 363, 639, 664, 675, 816
FokI GGATG 2 cut(s) 428, 1018
FriOI GRGCYC 2 cut(s) 120, 213
Fsp4HI GCNGC 6 cut(s) 360, 363, 639, 664, 675, 816
FspBI CTAG 2 cut(s) 87, 660
GlaI GCGC 1 cut(s) 193
GluI GCNGC 6 cut(s) 360, 363, 639, 664, 675, 816
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 3 cut(s) 643, 690, 803
HaeIII GGCC 1 cut(s) 815
HapII CCGG 2 cut(s) 306, 333
HgaI GACGC 1 cut(s) 932
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 9 cut(s) 160, 169, 191, 198, 209, 297, 427, 562, 975
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 3 cut(s) 130, 601, 766
HindII GTYRAC 3 cut(s) 130, 601, 766
HinfI GANTC 6 cut(s) 37, 69, 224, 270, 326, 830
HpaII CCGG 2 cut(s) 306, 333
HphI GGTGA 5 cut(s) 136, 257, 311, 334, 911
Hpy188I TCNGA 6 cut(s) 36, 65, 74, 102, 269, 835
Hpy188III TCNNGA 3 cut(s) 29, 274, 559
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 8 cut(s) 148, 245, 382, 442, 610, 655, 742, 841
HpyCH4III ACNGT 7 cut(s) 184, 568, 598, 605, 748, 775, 998
HpyCH4IV ACGT 2 cut(s) 634, 1026
HpyCH4V TGCA 6 cut(s) 383, 492, 571, 794, 941, 1024
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 208, 515, 680, 787, 912, 938
HpyF3I CTNAG 1 cut(s) 834
HpySE526I ACGT 2 cut(s) 634, 1026
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 9 cut(s) 160, 169, 191, 198, 209, 297, 427, 562, 975
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 5 cut(s) 409, 424, 514, 671, 702
Lsp1109I GCAGC 5 cut(s) 349, 371, 625, 661, 675
LweI GCATC 3 cut(s) 406, 924, 1040
MaeI CTAG 2 cut(s) 87, 660
MaeII ACGT 2 cut(s) 634, 1026
MaeIII GTNAC 3 cut(s) 860, 899, 992
MalI GATC 6 cut(s) 27, 33, 135, 290, 809, 1019
MboI GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
MboII GAAGA 6 cut(s) 35, 78, 89, 232, 331, 881
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 6 cut(s) 120, 213, 573, 699, 744, 1026
MluCI AATT 3 cut(s) 716, 936, 953
MlyI GAGTC 3 cut(s) 218, 335, 839
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 7 cut(s) 96, 277, 371, 544, 620, 820, 829
MseI TTAA 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 306, 333
MwoI GCNNNNNNNGC 7 cut(s) 92, 208, 515, 680, 787, 912, 938
NcoI CCATGG 2 cut(s) 187, 293
NdeII GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
NlaIII CATG 9 cut(s) 160, 169, 191, 198, 209, 297, 427, 562, 975
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 899
NspI RCATGY 1 cut(s) 169
PagI TCATGA 1 cut(s) 558
PciI ACATGT 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 37, 69, 270
PflFI GACNNNGTC 1 cut(s) 182
PinAI ACCGGT 2 cut(s) 305, 332
PkrI GCNGC 6 cut(s) 361, 364, 640, 665, 676, 817
PleI GAGTC 3 cut(s) 218, 334, 838
PpsI GAGTC 3 cut(s) 218, 334, 838
Ppu21I YACGTR 1 cut(s) 1027
PscI ACATGT 1 cut(s) 165
Psp124BI GAGCTC 2 cut(s) 120, 213
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 605
PsuI RGATCY 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 176, 977, 1000
RsaNI GTAC 3 cut(s) 175, 976, 999
SacI GAGCTC 2 cut(s) 120, 213
SalI GTCGAC 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 708
SatI GCNGC 6 cut(s) 360, 363, 639, 664, 675, 816
Sau3AI GATC 6 cut(s) 25, 31, 133, 288, 807, 1017
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 3 cut(s) 218, 335, 839
SduI GDGCHC 6 cut(s) 120, 213, 573, 699, 744, 1026
SfaNI GCATC 3 cut(s) 406, 924, 1040
SinI GGWCC 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 212, 371
SmoI CTYRAG 2 cut(s) 212, 371
Sse9I AATT 3 cut(s) 716, 936, 953
SsiI CCGC 1 cut(s) 816
SspMI CTAG 2 cut(s) 87, 660
SstI GAGCTC 2 cut(s) 120, 213
StyI CCWWGG 5 cut(s) 187, 293, 519, 678, 927
TaaI ACNGT 7 cut(s) 184, 568, 598, 605, 748, 775, 998
TaiI ACGT 2 cut(s) 637, 1029
TaqI TCGA 1 cut(s) 600
TasI AATT 3 cut(s) 716, 936, 953
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 3 cut(s) 37, 69, 270
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TscAI CASTG 3 cut(s) 586, 673, 751
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 5 cut(s) 359, 362, 638, 663, 674
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 4 cut(s) 130, 629, 816, 883
TspGWI ACGGA 3 cut(s) 58, 725, 748
TspRI CASTG 3 cut(s) 586, 673, 751
Tth111I GACNNNGTC 1 cut(s) 182
VneI GTGCAC 2 cut(s) 569, 1022
VpaK11BI GGWCC 1 cut(s) 605
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 1 cut(s) 953
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 3 cut(s) 329, 600, 1011
XspI CTAG 2 cut(s) 87, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.