Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

11608723 .. 11609522

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCACGACAAAGCCGCTCTCCCCGAAATGAAGAAGGGAGAAGACCGTGGGCCGCGCTCGATCGCGCTGATGTCATCCCAGGCCGGCCAAGTCGGAATCTACGGCTACACGGCCTACTCCGCCAGCAAGTTCGGGCTCCGTGGCTTGGCCGAGGCTCTGCAGCAAGAGGTGATTTCTCACGACATTCACGTTTCTCTCGTATTCCCGCCGGACACAGACACCCCTGGCTTCGCTGAAGAGACCAAGAGGCGGCCGCCCCTGACTGGCATTATAGCGGAGTCGTCTGGGGCGATGAAAGCCGAAGATGTTGCGAAGAGGGCTTTGGATGGGATTAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGTTATTGTTGTCCATTGCCACTGCTGGGTTGTCTCCTCAGAGGTCCTTTGTTATGGCATTTTTCGAGGTGGTTGCAGCTGGTTTGGTTCGTCTCGTTGCTCTGTGTTTTCAGTGGAATTGGTATACTAGCATACAGAAGTGGCAAGCACAGAACAAGAGTGAGTATTGTTTCATATCACTGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

6.83

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	4 - 82	1.3e-14	short chain dehydrogenase
adh_short_C2	PF13561	4 - 87	4.4e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	494
AccII	CGCG	2 cut(s)	55, 65
AciI	CCGC	7 cut(s)	15, 53, 120, 206, 250, 254, 275
AcoI	YGGCCR	3 cut(s)	85, 147, 251
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	145, 249, 263, 396
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	78, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	3 cut(s)	233, 408, 467
AoxI	GGCC	6 cut(s)	50, 81, 85, 111, 147, 251
ApeKI	GCWGC	2 cut(s)	160, 446
AspLEI	GCGC	2 cut(s)	57, 67
AspS9I	GGNCC	2 cut(s)	50, 414
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	172, 458
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	2 cut(s)	118, 126
BcgI	CGANNNNNNTGC	4 cut(s)	290, 324, 425, 459
BciT130I	CCWGG	2 cut(s)	80, 225
BcoDI	GTCTC	3 cut(s)	233, 408, 467
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	6 cut(s)	15, 53, 161, 251, 254, 447
BlsI	GCNGC	6 cut(s)	16, 54, 162, 252, 255, 448
Bme1390I	CCNGG	2 cut(s)	80, 225
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	50, 414
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	80, 225
BpiI	GAAGAC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	46, 78, 139, 150, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 249, 263, 396
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	80, 225
BseDI	CCNNGG	5 cut(s)	46, 78, 139, 150, 223
BseGI	GGATG	2 cut(s)	74, 331
BseLI	CCNNNNNNNGG	4 cut(s)	145, 249, 263, 396
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	396
BseX3I	CGGCCG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	172, 458
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	2 cut(s)	55, 65
Bsh1285I	CGRYCG	2 cut(s)	63, 254
BshFI	GGCC	6 cut(s)	52, 83, 87, 113, 149, 253
BsiEI	CGRYCG	2 cut(s)	63, 254
BsiSI	CCGG	2 cut(s)	84, 209
BslI	CCNNNNNNNGG	4 cut(s)	145, 249, 263, 396
BsmAI	GTCTC	3 cut(s)	233, 408, 467
BsmBI	CGTCTC	1 cut(s)	467
BsnI	GGCC	6 cut(s)	52, 83, 87, 113, 149, 253
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	7 cut(s)	15, 53, 120, 206, 250, 254, 275
BspANI	GGCC	6 cut(s)	52, 83, 87, 113, 149, 253
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	55, 65
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	46, 78, 139, 150, 223
BssMI	GATC	1 cut(s)	60
BssNAI	GTATAC	1 cut(s)	495
Bst1107I	GTATAC	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	80, 225
Bst4CI	ACNGT	2 cut(s)	47, 552
Bst6I	CTCTTC	2 cut(s)	231, 308
BstC8I	GCNNGC	3 cut(s)	85, 124, 516
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	2 cut(s)	46, 139
BstF5I	GGATG	2 cut(s)	74, 331
BstFNI	CGCG	2 cut(s)	55, 65
BstHHI	GCGC	2 cut(s)	57, 67
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	3 cut(s)	233, 408, 467
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	2 cut(s)	63, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 296, 317
BstNI	CCWGG	2 cut(s)	80, 225
BstSCI	CCNGG	2 cut(s)	78, 223
BstSFI	CTRYAG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	55, 65
BstV1I	GCAGC	2 cut(s)	172, 458
BstV2I	GAAGAC	1 cut(s)	48
BstZ17I	GTATAC	1 cut(s)	495
BstZI	CGGCCG	1 cut(s)	251
BsuRI	GGCC	6 cut(s)	52, 83, 87, 113, 149, 253
BtgI	CCRYGG	2 cut(s)	46, 139
BtgZI	GCGATG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	74, 331
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	390, 488, 548
Cac8I	GCNNGC	3 cut(s)	85, 124, 516
CciNI	GCGGCCGC	1 cut(s)	251
CfoI	GCGC	2 cut(s)	57, 67
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	50, 414
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	3 cut(s)	85, 147, 251
EagI	CGGCCG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	231, 308
EarI	CTCTTC	2 cut(s)	231, 308
EciI	GGCGGA	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	414
Eco52I	CGGCCG	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	78, 223
EcoT38I	GRGCYC	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	467
FaiI	YATR	5 cut(s)	272, 425, 495, 503, 545
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	6 cut(s)	15, 53, 161, 251, 254, 447
FokI	GGATG	2 cut(s)	61, 338
FriOI	GRGCYC	1 cut(s)	138
FseI	GGCCGGCC	1 cut(s)	87
Fsp4HI	GCNGC	6 cut(s)	15, 53, 161, 251, 254, 447
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	2 cut(s)	56, 66
GluI	GCNGC	6 cut(s)	15, 53, 161, 251, 254, 447
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	6 cut(s)	52, 83, 87, 113, 149, 253
HapII	CCGG	2 cut(s)	84, 209
HhaI	GCGC	2 cut(s)	57, 67
Hin6I	GCGC	2 cut(s)	55, 65
HinP1I	GCGC	2 cut(s)	55, 65
HinfI	GANTC	2 cut(s)	96, 278
HpaII	CCGG	2 cut(s)	84, 209
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	95, 411
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	28, 362
HpyCH4III	ACNGT	2 cut(s)	47, 552
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	4, 160, 360, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 296, 317
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	189
HspAI	GCGC	2 cut(s)	55, 65
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	172, 458
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	189
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	1 cut(s)	60
MboII	GAAGA	5 cut(s)	43, 53, 248, 314, 325
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	145, 160, 240, 309, 405, 417, 430
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	2 cut(s)	333, 555
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	84, 209
MspR9I	CCNGG	2 cut(s)	80, 225
MvaI	CCWGG	2 cut(s)	80, 225
MvnI	CGCG	2 cut(s)	55, 65
MwoI	GCNNNNNNNGC	3 cut(s)	119, 296, 317
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	60
NgoMIV	GCCGGC	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	175
NotI	GCGGCCGC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 195, 287
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	16, 54, 162, 252, 255, 448
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	78, 223
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	78, 223
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	50, 414
PspPPI	RGGWCCY	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	449
RigI	GGCCGGCC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	333, 555
SatI	GCNGC	6 cut(s)	15, 53, 161, 251, 254, 447
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	50, 414
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	80, 225
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	171, 192, 416, 441, 451
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	414
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	7 cut(s)	15, 53, 120, 206, 250, 254, 275
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	78, 223
TaaI	ACNGT	2 cut(s)	47, 552
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	59, 435
TasI	AATT	1 cut(s)	487
TauI	GCSGC	4 cut(s)	17, 55, 253, 256
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	333, 555
Tru9I	TTAA	2 cut(s)	333, 555
TscAI	CASTG	3 cut(s)	397, 488, 555
TseI	GCWGC	2 cut(s)	160, 446
TspDTI	ATGAA	3 cut(s)	44, 308, 532
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	397, 488, 555
VpaK11BI	GGWCC	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	494
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.