Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTCTACTCTCACAGCCTCCTTGCTCGGAAAGAGCCGCTCGGCCAAATCTGGATGGCCGCCACCATGCACGCCAAGATGAACCGCAGGAATCTCAACCAGATCGACCTCATCAGAATCTGCGAAGAGATTCTGAATCCAAGAGCTCCTATGGCTCTCCGACTCTCCAGTATTCTCATGGGTGGAGTCGTCATCGTCTACGAACGTAAAGTGAAGCTCCTATTTGGTACCCTTCCCCTTCTTCTCCTTCTTCTTTTTTTGTTGCTGAAATTTTTACAAAATCAACCTTGTGTTCCAACGATTTCTGACGTTTATTTTCAATTTCCACACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

10.02

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 76	2.1e-27	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	38, 60, 85
AcoI	YGGCCR	2 cut(s)	43, 57
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	2 cut(s)	146, 217
AluI	AGCT	2 cut(s)	146, 217
Alw21I	GWGCWC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	43, 57
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	38, 60
BlsI	GCNGC	2 cut(s)	39, 61
BmiI	GGNNCC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	45, 59
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	45, 59
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	3 cut(s)	38, 60, 85
BspANI	GGCC	2 cut(s)	45, 59
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	45, 59
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	67, 178
CviJI	RGCY	7 cut(s)	18, 37, 45, 59, 146, 155, 217
CviKI_1	RGCY	7 cut(s)	18, 37, 45, 59, 146, 155, 217
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	43, 57
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	70, 181
FaiI	YATR	3 cut(s)	68, 152, 179
FatI	CATG	2 cut(s)	66, 177
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	38, 60
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	38, 60
GluI	GCNGC	2 cut(s)	38, 60
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	45, 59
Hin1II	CATG	2 cut(s)	70, 181
HinfI	GANTC	6 cut(s)	91, 117, 130, 136, 162, 186
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	30, 116, 135, 161, 307
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	242, 248, 257
HpyCH4IV	ACGT	2 cut(s)	205, 309
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	2 cut(s)	205, 309
Hsp92II	CATG	2 cut(s)	70, 181
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	151, 222
LpnPI	CCDG	4 cut(s)	37, 73, 113, 181
MaeII	ACGT	2 cut(s)	205, 309
MalI	GATC	1 cut(s)	104
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	137, 233, 242
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	269, 320
MlyI	GAGTC	2 cut(s)	156, 195
MmeI	TCCRAC	2 cut(s)	184, 320
MnlI	CCTC	2 cut(s)	29, 119
MroXI	GAANNNNTTC	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	2 cut(s)	70, 181
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	91, 117, 130, 136
PkrI	GCNGC	2 cut(s)	39, 61
PleI	GAGTC	2 cut(s)	156, 194
PpsI	GAGTC	2 cut(s)	156, 194
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	2 cut(s)	38, 60
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	156, 195
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	6 cut(s)	111, 148, 208, 219, 289, 312
SmiMI	CAYNNNNRTG	1 cut(s)	331
Sse9I	AATT	2 cut(s)	269, 320
SsiI	CCGC	3 cut(s)	38, 60, 85
SstI	GAGCTC	1 cut(s)	148
TaiI	ACGT	2 cut(s)	208, 312
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	269, 320
TauI	GCSGC	2 cut(s)	40, 62
TfiI	GAWTC	4 cut(s)	91, 117, 130, 136
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.