RchiOBHm_Chr0c11g0499571

Sister chromatid cohesion 1 protein 1-like

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTCTACTATGAAGATTGGTAAACTCATGGAGCAGCCAGCTAGTGTTCTCATGGGTCGTTTATTTAAACCCGGAAGTGGAGAAACATATTATCCAGCTCCTCTCTTAGAGCTATTCAAGGAAAAACATACCCATGACTCACCTTCAGCATTAACCTCGCCACCTCTGCCTCCAGAACCATCATCATGGTCACCACCTGAAAAACAAACTTATCACGACCCGGTGAGATATTTAAGTCAATACAGCTACTTTTAG

Protein Analysis

84

Amino Acids

9.53

Weight (kDa)

6.82

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05490 AT5G05490
fragaria_vesca FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica MD12G1179600.v1.1
prunus_persica Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis pycom12g16940
rosa_chinensis RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 4 cut(s) 41, 98, 112, 246
AluI AGCT 4 cut(s) 41, 98, 112, 246
ApeKI GCWGC 1 cut(s) 34
AsuC2I CCSGG 2 cut(s) 72, 221
AsuHPI GGTGA 3 cut(s) 132, 183, 235
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BcnI CCSGG 2 cut(s) 72, 221
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 72, 221
BmrFI CCNGG 2 cut(s) 72, 221
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 72, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 72, 221
BslI CCNNNNNNNGG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 106
BstEII GGTNACC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 70, 219
BstV1I GCAGC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 39
CviAII CATG 4 cut(s) 28, 52, 134, 186
CviJI RGCY 5 cut(s) 37, 41, 98, 112, 246
CviKI_1 RGCY 5 cut(s) 37, 41, 98, 112, 246
DdeI CTNAG 1 cut(s) 106
DraI TTTAAA 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 189
FaeI CATG 4 cut(s) 31, 55, 137, 189
FaiI YATR 7 cut(s) 11, 29, 53, 88, 129, 135, 187
FatI CATG 4 cut(s) 27, 51, 133, 185
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 2 cut(s) 72, 221
Hin1II CATG 4 cut(s) 31, 55, 137, 189
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 72, 221
HphI GGTGA 3 cut(s) 132, 183, 235
Hpy166II GTNNAC 2 cut(s) 6, 23
Hpy188III TCNNGA 2 cut(s) 173, 215
Hpy8I GTNNAC 2 cut(s) 6, 23
HpyAV CCTTC 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 4 cut(s) 31, 55, 137, 189
LmnI GCTCC 2 cut(s) 31, 103
LpnPI CCDG 6 cut(s) 51, 85, 108, 186, 210, 234
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 189
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 4 cut(s) 111, 166, 174, 180
MseI TTAA 3 cut(s) 66, 152, 233
MslI CAYNNNNRTG 2 cut(s) 132, 184
MspI CCGG 2 cut(s) 72, 221
MspR9I CCNGG 2 cut(s) 72, 221
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 2 cut(s) 72, 221
NlaIII CATG 4 cut(s) 31, 55, 137, 189
NmuCI GTSAC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 132, 184
SaqAI TTAA 3 cut(s) 66, 152, 233
SatI GCNGC 1 cut(s) 35
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 72, 221
SetI ASST 8 cut(s) 43, 100, 114, 145, 158, 166, 199, 248
SmiMI CAYNNNNRTG 2 cut(s) 132, 184
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 70, 219
Tru1I TTAA 3 cut(s) 66, 152, 233
Tru9I TTAA 3 cut(s) 66, 152, 233
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.