Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000542

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATAAACTGAAAGCCAATCCTAATGGCATGAAAGGAGCTGATACCAACCCGGCAACACCAAGAAATTCTGGCGATGAGAGAAGATCCATCCTGAGCTCCTCATCTGGAAAGGGAGTTAACAGAAACAGTTCAGAAGTCAATTCTGGACGGAAGAGGCGTTATTCATCTATACATAGCAATGATGGACTTGAACCAGTATTAGAGGATAATGGATGTCAGCATTCTGATCCAAACTTCAACGTAATAAGGTTATCTGGAAATGGCCCAACACCTGAGCATGAATTATTGATGGAAACTGGACCGACACAGACACAACAACCTATCATCAATCAACCACTGGAAAAAGTGACTGATGCCATTCGAATGGAACTGAAATCCCATTTTGAAATACCGGGTGGCCCTCAAGTAGAATCCCTGAACAAACTGACTGCTGGAATGAATCGAAGAGGAGCGGCTATGCTTTTCTATCAAACTTGTGTTCTTGCTACTCGTGATTTCGTAAAAGTTAAACAAATTGCCCCTTATGAGGATGTTCTCATTACTAGAGGACCAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006323 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008152 GO:0008278 GO:0008608 GO:0009987 GO:0010032 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0046483 GO:0048285 GO:0050896 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051716 GO:0051754 GO:0061982 GO:0061983 GO:0070013 GO:0070192 GO:0070601 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

187

Amino Acids

20.53

Weight (kDa)

8.58

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	135 - 187	4e-20	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05490 AT5G05490
fragaria_vesca	FvH4_5g27761 FvH4_5g31060 FvH4_5g35270
malus_domestica	MD12G1179600.v1.1
prunus_persica	Prupe.2G254800_v2.0.a1 Prupe.2G254800_v2.0.a1
pyrus_communis	pycom12g16940
rosa_chinensis	RchiOBHm_Chr0c11g0499361 RchiOBHm_Chr0c11g0499371 RchiOBHm_Chr0c11g0499561 RchiOBHm_Chr0c11g0499571 RchiOBHm_Chr0c11g0499581 RchiOBHm_Chr5g0049691 RchiOBHm_Chr5g0049701 RchiOBHm_Chr7g0230591 RchiOBHm_Chr7g0230601 RchiOBHm_Chr7g0231161 RchiOBHm_Chr7g0231171 RchiOBHm_Chr7g0231181 RchiOBHm_Chr7g0236141 RchiOBHm_Chr7g0236431 RchiOBHm_Chr7g0236461 RchiOBHm_Chr7g0236501
rosa_laevigata	RLG00000001078 RLG00000001102 RLG00000001195 RLG00000001205 RLG00000001937 RLG00000030015 RLG00000030017
rosa_multiflora	Rmu_co8170892.1_g000001 Rmu_co8276489.1_g000001 Rmu_sc0000112.1_g000006 Rmu_sc0000768.1_g000037 Rmu_sc0002222.1_g000015 Rmu_sc0002449.1_g000012 Rmu_sc0002449.1_g000029 Rmu_sc0002905.1_g000001 Rmu_sc0003720.1_g000008 Rmu_sc0005578.1_g000004 Rmu_sc0010974.1_g000001 Rmu_sc0010983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225060 Rroxscaffold_3G00225070 Rroxscaffold_3G00225350 Rroxscaffold_3G00226600 Rroxscaffold_3G00229860
rosa_rugosa	Rorug07G0294500 Rorug07G0294600 Rorug07G0295300 Rorug07G0297000
rosa_samantha	Rh1AG102400 Rh5BG337600 Rh5DG349800 Rh7AG413200 Rh7AG440900 Rh7AG448200 Rh7AG448700 Rh7AG449500 Rh7AG451400 Rh7AG452700 Rh7AG452800 Rh7AG453000 Rh7AG453100 Rh7CG431600 Rh7CG432100 Rh7CG453400 Rh7CG469500 Rh7CG471500 Rh7DG368200 Rh7DG409000 Rh7DG430700 Rh7DG438900 Rh7DG440800
rosa_wichuraiana	Rw1G008170 Rw7G034070 Rw7G036650 Rw7G036670 Rw7G036710 Rw7G037350 Rw7G037530 Rw7G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	455
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	81, 224
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	3 cut(s)	194, 241, 389
AluBI	AGCT	2 cut(s)	41, 99
AluI	AGCT	2 cut(s)	41, 99
Alw21I	GWGCWC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	81, 224
AoxI	GGCC	2 cut(s)	265, 400
ApoI	RAATTY	1 cut(s)	67
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	4 cut(s)	266, 302, 401, 551
AsuC2I	CCSGG	2 cut(s)	53, 396
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	302, 551
BanII	GRGCYC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	3 cut(s)	98, 179, 286
BcnI	CCSGG	2 cut(s)	53, 396
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	53, 396
Bme18I	GGWCC	2 cut(s)	302, 551
BmgT120I	GGNCC	4 cut(s)	266, 302, 401, 551
BmrFI	CCNGG	2 cut(s)	53, 396
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	2 cut(s)	95, 276
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	53, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	3 cut(s)	197, 304, 345
Bse3DI	GCAATG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	90, 221, 538
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	86, 267
BseNI	ACTGG	3 cut(s)	197, 304, 345
BseRI	GAGGAG	2 cut(s)	91, 465
BshFI	GGCC	2 cut(s)	267, 402
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	53, 395
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	267, 402
Bsp119I	TTCGAA	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	86, 229
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	267, 402
BspCNI	CTCAG	2 cut(s)	87, 268
BspPI	GGATC	2 cut(s)	81, 224
BspT104I	TTCGAA	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	197, 304, 345
BssMI	GATC	2 cut(s)	86, 229
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	149, 442
BstBI	TTCGAA	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	95, 276
BstF5I	GGATG	3 cut(s)	90, 221, 538
BstKTI	GATC	2 cut(s)	89, 232
BstMBI	GATC	2 cut(s)	86, 229
BstSCI	CCNGG	2 cut(s)	51, 394
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	267, 402
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	90, 221, 538
BtsIMutI	CAGTG	1 cut(s)	338
Cfr13I	GGNCC	4 cut(s)	266, 302, 401, 551
CviAII	CATG	2 cut(s)	31, 281
CviJI	RGCY	6 cut(s)	17, 41, 99, 267, 402, 458
CviKI_1	RGCY	6 cut(s)	17, 41, 99, 267, 402, 458
DdeI	CTNAG	2 cut(s)	95, 276
DpnI	GATC	2 cut(s)	88, 231
DpnII	GATC	2 cut(s)	86, 229
Eam1104I	CTCTTC	2 cut(s)	149, 442
EarI	CTCTTC	2 cut(s)	149, 442
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	302, 551
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	2 cut(s)	34, 284
FaiI	YATR	7 cut(s)	32, 173, 177, 282, 461, 528, 560
FatI	CATG	2 cut(s)	30, 280
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	3 cut(s)	77, 228, 545
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	267, 402
HapII	CCGG	2 cut(s)	53, 395
Hin1II	CATG	2 cut(s)	34, 284
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	413, 442
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	53, 395
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	136, 229
Hpy188III	TCNNGA	5 cut(s)	94, 108, 147, 258, 494
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	95, 276
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	34, 284
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	86, 229
LmnI	GCTCC	3 cut(s)	38, 104, 452
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	88, 231
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	86, 229
MboII	GAAGA	3 cut(s)	96, 166, 459
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	4 cut(s)	67, 142, 284, 516
MnlI	CCTC	7 cut(s)	112, 150, 199, 414, 443, 523, 542
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	120, 510
MslI	CAYNNNNRTG	2 cut(s)	180, 365
MspI	CCGG	2 cut(s)	53, 395
MspR9I	CCNGG	2 cut(s)	53, 396
Mva1269I	GAATGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	53, 396
NdeII	GATC	2 cut(s)	86, 229
NlaIII	CATG	2 cut(s)	34, 284
NmuCI	GTSAC	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	413, 442
PkrI	GCNGC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	266, 302, 401, 551
PsuI	RGATCY	1 cut(s)	86
RseI	CAYNNNNRTG	2 cut(s)	180, 365
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	120, 510
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	86, 229
Sau96I	GGNCC	4 cut(s)	266, 302, 401, 551
ScrFI	CCNGG	2 cut(s)	53, 396
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	6 cut(s)	43, 101, 246, 254, 277, 325
SfaNI	GCATC	1 cut(s)	346
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	2 cut(s)	302, 551
SmiMI	CAYNNNNRTG	2 cut(s)	180, 365
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	4 cut(s)	67, 142, 284, 516
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	51, 394
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	364, 445
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	4 cut(s)	67, 142, 284, 516
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	413, 442
Tru1I	TTAA	2 cut(s)	120, 510
Tru9I	TTAA	2 cut(s)	120, 510
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	47, 156, 297, 455
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	302, 551
XapI	RAATTY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.