Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

19618914 .. 19619405

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGTTCATTTTTAGGATGGACAGATGACCTGGCGCTCTTTGCTAGGGTTTGTGGAGCAACGCCGTTTCGGGTCCGTCGCTACCTATACCTTCTCCATTCATGGAGATTTCTTCAGGCTTTGGCTTCTTCTTGTTTACCCTTACTGTTTCCAATGGCAAAAGGGTTAGGCTCGTGTTTTCTATTCAGTGGTTTGTTGCTTGTCAATGATGGCTGTCGTATTAGCGGGGTTGGAGTAGCGTTGCTGGTGAGAGGATGGCTTGTTAGGAAGGCAGTTGTTGGTGTTGGAGAGTGGGATGCAGGAGGATCGGATCTCTTGCCTTTCTTCCATGGTCGTCTCAGAGGGCCGACTCATCTCTGCGAGGATGGTGGTATTTCGAGTGAGTTGTCATCGATCAGACCATGTTTTTTCATTCTCTGGATGGACCTTCGACGACGGAGAGGTACAGATAGTGTTGCAAGCAACAGGCCACCAAATGGCTTGGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.95

Weight (kDa)

9.37

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	313, 318
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	313, 318
AoxI	GGCC	2 cut(s)	344, 467
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	73, 344, 424
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	73, 424
BauI	CACGAG	1 cut(s)	172
BccI	CCATC	5 cut(s)	12, 203, 249, 359, 415
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	2 cut(s)	73, 424
BmgT120I	GGNCC	3 cut(s)	73, 344, 424
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	5 cut(s)	23, 260, 301, 370, 426
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	346, 469
BshVI	ATCGAT	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	346, 469
Bsp143I	GATC	3 cut(s)	305, 310, 393
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	346, 469
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	313, 318
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	305, 310, 393
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	5 cut(s)	23, 260, 301, 370, 426
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	308, 313, 396
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	305, 310, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	346, 469
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	5 cut(s)	23, 260, 301, 370, 426
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	460
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	73, 344, 424
ClaI	ATCGAT	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	3 cut(s)	102, 329, 402
CviJI	RGCY	8 cut(s)	119, 125, 171, 213, 259, 346, 469, 480
CviKI_1	RGCY	8 cut(s)	119, 125, 171, 213, 259, 346, 469, 480
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	3 cut(s)	307, 312, 395
DpnII	GATC	3 cut(s)	305, 310, 393
Eco130I	CCWWGG	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	73, 424
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	3 cut(s)	105, 332, 405
FaiI	YATR	4 cut(s)	88, 103, 330, 403
FatI	CATG	3 cut(s)	101, 328, 401
FauI	CCCGC	1 cut(s)	218
FokI	GGATG	5 cut(s)	30, 267, 308, 377, 433
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	346, 469
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	105, 332, 405
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	137, 487
Hpy188I	TCNGA	3 cut(s)	310, 341, 398
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	2 cut(s)	137, 487
Hpy99I	CGWCG	3 cut(s)	81, 435, 438
HpyAV	CCTTC	3 cut(s)	101, 262, 437
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	299, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	105, 332, 405
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	305, 310, 393
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	17, 44, 101, 230, 285, 403, 451
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	45
MalI	GATC	3 cut(s)	307, 312, 395
MboI	GATC	3 cut(s)	305, 310, 393
MboII	GAAGA	3 cut(s)	104, 120, 316
MflI	RGATCY	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	211, 265
MnlI	CCTC	5 cut(s)	245, 296, 335, 355, 434
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	305, 310, 393
NlaIII	CATG	3 cut(s)	105, 332, 405
NlaIV	GGNNCC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	476
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	3 cut(s)	73, 344, 424
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	305, 310, 393
Sau96I	GGNCC	3 cut(s)	73, 344, 424
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	5 cut(s)	33, 87, 93, 429, 445
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	2 cut(s)	73, 424
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	377, 392, 430
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	90, 400
TspGWI	ACGGA	2 cut(s)	65, 451
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	73, 424
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.