Rh6DG489600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001695
Physical Location & Seq
Reverse (-)
65006324 .. 65006911
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG489600.1

Sequence Viewer

Length: 588 bp
ATGGCGCCAATTTGGGTGTTGTTTGGTAACGAGTTGGTGGTAGACCGATTAGGTTTTGCCGGTGTATTGGTGCAATGCACTGAGGGTTGTCGACTGTGTCTGCATTTGTTCAAGGATGAGGGTGGCCAGGTTGGTATGGGTTTTTCTGTCAACGGTGGGCGAGTTGATTATGGCGGCGGTAACTTTTCTCTTGTGGAGGAGGAGCCGATCTTCTGGGCTCGAGTTCTTGAGGTCGTGCCTGGCTTGTTAACTGTTGATGGCAAGAGAGGATTGGGTGTTGCGGATGGGAAGGCTGTAGATGCTTGCGTTAGTAGATTTGGCGGCTGGTCTTCAGGTGGCAATGCTGGCGGTGCTGGATCTCTGGTTGATGATCTTCTTCCAGAGCAAGACTGGTTGCAGTGGCTGGGAGTGTCCAACTGGGCCTGCTGGGCTTTCATGGTGGATGTGGGCCTCAGTACCTGGATTGGGTTTTGGGCCCAAAAGGCAATTAGAAGCAAGAATAGGCCTAAGCGTGCTAAAGACGAGCTACATACAGATGGTGGAACTGTTGGGGATGCTGGTGCATCATCCTCAACTAGTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.67

Weight (kDa)

4.88

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 42, 91
AciI CCGC 5 cut(s) 174, 177, 281, 321, 348
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 465
AgsI TTSAA 1 cut(s) 112
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 3 cut(s) 126, 238, 458
AluBI AGCT 1 cut(s) 526
AluI AGCT 1 cut(s) 526
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 2 cut(s) 403, 459
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 5 cut(s) 124, 420, 448, 474, 503
ApaI GGGCCC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 420, 448, 474, 475
AvaI CYCGRG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 478
BalI TGGCCA 1 cut(s) 126
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 220, 478
BbsI GAAGAC 1 cut(s) 321
BccI CCATC 3 cut(s) 251, 278, 530
BciT130I CCWGG 3 cut(s) 128, 240, 460
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 2 cut(s) 428, 482
BisI GCNGC 2 cut(s) 175, 322
BlsI GCNGC 2 cut(s) 176, 323
Bme1390I CCNGG 3 cut(s) 128, 240, 460
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 4 cut(s) 420, 448, 474, 475
BmiI GGNNCC 3 cut(s) 6, 204, 476
BmrFI CCNGG 3 cut(s) 128, 240, 460
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 3 cut(s) 289, 544, 572
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 395, 422
Bse3DI GCAATG 2 cut(s) 80, 346
BseBI CCWGG 3 cut(s) 128, 240, 460
BseGI GGATG 5 cut(s) 121, 289, 448, 559, 566
BseLI CCNNNNNNNGG 1 cut(s) 465
BseMI GCAATG 2 cut(s) 80, 346
BseMII CTCAG 2 cut(s) 72, 466
BseNI ACTGG 2 cut(s) 395, 422
BseRI GAGGAG 2 cut(s) 212, 215
BseSI GKGCMC 1 cut(s) 478
BseYI CCCAGC 2 cut(s) 403, 426
BshFI GGCC 5 cut(s) 126, 422, 450, 476, 505
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 465
BsnI GGCC 5 cut(s) 126, 422, 450, 476, 505
BsoBI CYCGRG 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 474
Bsp1286I GDGCHC 2 cut(s) 220, 478
Bsp143I GATC 3 cut(s) 207, 356, 370
BspACI CCGC 5 cut(s) 174, 177, 281, 321, 348
BspANI GGCC 5 cut(s) 126, 422, 450, 476, 505
BspCNI CTCAG 2 cut(s) 73, 465
BspLI GGNNCC 3 cut(s) 6, 204, 476
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 80, 346
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 395, 422
BssAI RCCGGY 1 cut(s) 59
BssMI GATC 3 cut(s) 207, 356, 370
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 128, 240, 460
Bst4CI ACNGT 4 cut(s) 96, 155, 253, 547
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 304, 346, 424, 513
BstDEI CTNAG 3 cut(s) 81, 452, 507
BstF5I GGATG 5 cut(s) 121, 289, 448, 559, 566
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 210, 359, 373
BstMBI GATC 3 cut(s) 207, 356, 370
BstMWI GCNNNNNNNGC 5 cut(s) 299, 345, 350, 428, 482
BstNI CCWGG 3 cut(s) 128, 240, 460
BstSCI CCNGG 3 cut(s) 126, 238, 458
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 5 cut(s) 126, 422, 450, 476, 505
BtsCI GGATG 5 cut(s) 121, 289, 448, 559, 566
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 78, 404
Cac8I GCNNGC 4 cut(s) 304, 346, 424, 513
CaiI CAGNNNCTG 2 cut(s) 403, 459
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 420, 448, 474, 475
Csp6I GTAC 1 cut(s) 456
CviAII CATG 1 cut(s) 436
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 3 cut(s) 81, 452, 507
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 209, 358, 372
DpnII GATC 3 cut(s) 207, 356, 370
EaeI YGGCCR 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 2 cut(s) 220, 478
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 3 cut(s) 126, 238, 458
EcoT38I GRGCYC 2 cut(s) 220, 478
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 439
FaiI YATR 4 cut(s) 137, 171, 437, 531
FatI CATG 1 cut(s) 435
FblI GTMKAC 2 cut(s) 42, 91
Fnu4HI GCNGC 2 cut(s) 175, 322
FokI GGATG 5 cut(s) 128, 296, 455, 553, 566
FriOI GRGCYC 2 cut(s) 220, 478
Fsp4HI GCNGC 2 cut(s) 175, 322
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 175, 322
GsaI CCCAGC 2 cut(s) 407, 430
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 126, 422, 450, 476, 505
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 92, 151, 249
HindII GTYRAC 3 cut(s) 92, 151, 249
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 4 cut(s) 43, 92, 151, 249
Hpy188III TCNNGA 2 cut(s) 227, 380
Hpy8I GTNNAC 4 cut(s) 43, 92, 151, 249
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 4 cut(s) 96, 155, 253, 547
HpyCH4V TGCA 5 cut(s) 73, 78, 103, 397, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 345, 350, 428, 482
HpyF3I CTNAG 3 cut(s) 81, 452, 507
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 207, 356, 370
LmnI GCTCC 1 cut(s) 202
LweI GCATC 3 cut(s) 289, 544, 572
MaeI CTAG 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 26, 179
MalI GATC 3 cut(s) 209, 358, 372
MboI GATC 3 cut(s) 207, 356, 370
MboII GAAGA 4 cut(s) 202, 321, 365, 368
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 220, 478
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 9, 486
MluNI TGGCCA 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 8 cut(s) 76, 112, 190, 193, 223, 260, 461, 580
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MseI TTAA 2 cut(s) 248, 586
MslI CAYNNNNRTG 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 126
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 128, 240, 460
MvaI CCWGG 3 cut(s) 128, 240, 460
MwoI GCNNNNNNNGC 5 cut(s) 299, 345, 350, 428, 482
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 207, 356, 370
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 3 cut(s) 6, 204, 476
PaeR7I CTCGAG 1 cut(s) 219
PceI AGGCCT 1 cut(s) 505
PflFI GACNNNGTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 176, 323
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 126, 238, 458
PspFI CCCAGC 2 cut(s) 403, 426
PspGI CCWGG 3 cut(s) 126, 238, 458
PspN4I GGNNCC 3 cut(s) 6, 204, 476
PspOMI GGGCCC 1 cut(s) 474
PspPI GGNCC 4 cut(s) 420, 448, 474, 475
PspXI VCTCGAGB 1 cut(s) 219
PstNI CAGNNNCTG 2 cut(s) 403, 459
PsuI RGATCY 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 96
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 534
SalI GTCGAC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 248, 586
SatI GCNGC 2 cut(s) 175, 322
Sau3AI GATC 3 cut(s) 207, 356, 370
Sau96I GGNCC 4 cut(s) 420, 448, 474, 475
ScrFI CCNGG 3 cut(s) 128, 240, 460
SduI GDGCHC 2 cut(s) 220, 478
SetI ASST 6 cut(s) 55, 132, 234, 337, 461, 528
SfaNI GCATC 3 cut(s) 289, 544, 572
SfcI CTRYAG 1 cut(s) 294
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 219, 227
SmoI CTYRAG 2 cut(s) 219, 227
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 2 cut(s) 9, 486
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 5 cut(s) 174, 177, 281, 321, 348
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 576
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 3 cut(s) 126, 238, 458
TaaI ACNGT 4 cut(s) 96, 155, 253, 547
TaqI TCGA 2 cut(s) 91, 220
TaqII GACCGA 1 cut(s) 60
TasI AATT 2 cut(s) 9, 486
TauI GCSGC 2 cut(s) 177, 324
Tru1I TTAA 2 cut(s) 248, 586
Tru9I TTAA 2 cut(s) 248, 586
TscAI CASTG 2 cut(s) 85, 404
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 2 cut(s) 85, 404
Tth111I GACNNNGTC 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XhoI CTCGAG 1 cut(s) 219
XmiI GTMKAC 2 cut(s) 42, 91
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.