Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

18062009 .. 18062314

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGATCCGGATCGTTGCAGCGGTCGGCGTCAGGCTTGGTGGCTGCGAGAGTGGGGATCCGTGGTTGTCAATTCGCTACTTCGGCGGTTGAGGATGATGAGATTAAAGGCGAATCCAATCCTTCTTCTATGGCGGAGGTTGTTGAAGGGATGTTGAGATTAGGTTTTGACGATGGTGGTAGAGTCCGTCTTGTTGGTGGTGGAGGGTGGGATCCAGGAGGGTCGAATCTCTCGTCTCTCTTCCATGGTTGTCTCAAAAGGCTGACTTATCTCAGCAAGGATGGTGACTTTTCGAGTGTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.44

Weight (kDa)

5.23

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	3 cut(s)	22, 86, 134
AclWI	GGATC	6 cut(s)	13, 19, 52, 65, 206, 219
AcyI	GRCGYC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	240, 257
AlwI	GGATC	6 cut(s)	13, 19, 52, 65, 206, 219
Aor13HI	TCCGGA	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	19, 44
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AsuHPI	GGTGA	1 cut(s)	296
BamHI	GGATCC	3 cut(s)	5, 57, 211
BbvI	GCAGC	2 cut(s)	31, 31
BccI	CCATC	2 cut(s)	167, 275
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	240, 257
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	20, 45
BlsI	GCNGC	2 cut(s)	21, 46
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	7, 59, 213
BmrFI	CCNGG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	61, 244
BsaWI	WCCGGW	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	10
BseAI	TCCGGA	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	61, 244
BseGI	GGATG	3 cut(s)	100, 156, 286
BseJI	GATNNNNATC	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	31, 31
Bsh1285I	CGRYCG	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	9
BsmAI	GTCTC	2 cut(s)	240, 257
BsmBI	CGTCTC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	5, 11, 57, 211
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	3 cut(s)	22, 86, 134
BspCNI	CTCAG	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	7, 59, 213
BspPI	GGATC	6 cut(s)	13, 19, 52, 65, 206, 219
BssECI	CCNNGG	2 cut(s)	61, 244
BssMI	GATC	4 cut(s)	5, 11, 57, 211
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	2 cut(s)	61, 244
BstF5I	GGATG	3 cut(s)	100, 156, 286
BstKTI	GATC	4 cut(s)	8, 14, 60, 214
BstMAI	GTCTC	2 cut(s)	240, 257
BstMBI	GATC	4 cut(s)	5, 11, 57, 211
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	31, 31
BstX2I	RGATCY	3 cut(s)	5, 57, 211
BstYI	RGATCY	3 cut(s)	5, 57, 211
BtgI	CCRYGG	2 cut(s)	61, 244
BtsCI	GGATG	3 cut(s)	100, 156, 286
CseI	GACGC	1 cut(s)	18
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	3 cut(s)	36, 44, 262
CviKI_1	RGCY	3 cut(s)	36, 44, 262
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	4 cut(s)	7, 13, 59, 213
DpnII	GATC	4 cut(s)	5, 11, 57, 211
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	131, 246
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	20, 45
FokI	GGATG	3 cut(s)	107, 163, 293
Fsp4HI	GCNGC	2 cut(s)	20, 45
GluI	GCNGC	2 cut(s)	20, 45
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	3 cut(s)	113, 183, 226
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	132, 140
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	8
Kzo9I	GATC	4 cut(s)	5, 11, 57, 211
LpnPI	CCDG	4 cut(s)	18, 22, 201, 228
Lsp1109I	GCAGC	2 cut(s)	31, 31
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	7, 13, 59, 213
MboI	GATC	4 cut(s)	5, 11, 57, 211
MboII	GAAGA	2 cut(s)	117, 232
MflI	RGATCY	3 cut(s)	5, 57, 211
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	85, 130, 197, 212
MroI	TCCGGA	1 cut(s)	8
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	5, 11, 57, 211
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	3 cut(s)	7, 59, 213
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	113, 226
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	21, 46
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	7, 59, 213
PsuI	RGATCY	3 cut(s)	5, 57, 211
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	20, 45
Sau3AI	GATC	4 cut(s)	5, 11, 57, 211
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	2 cut(s)	141, 166
SfcI	CTRYAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	22, 86, 134
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	2 cut(s)	224, 293
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	113, 226
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	19, 44
Tsp45I	GTSAC	1 cut(s)	284
TspGWI	ACGGA	2 cut(s)	50, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.