Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

40885715 .. 40886074

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGATTTTCGCCTTCACTCTCTTGCCATCTCTCCCTCTCCTCAAGTTTCGCCGCCTCTCCACCCAAACCTCCACCCTTAGATTCACTCCCACACGTGTCTCTCGCTCGCTCAAGCCTAACACCGCTCTCACCTCCTCCATCAATGACGCCCTCTCCGCCGATCCTCGGTCCGTCTCCTCCTCCGATGACTTCAAGCCCGGACTTCTCCGCCCTCGATCGAGCCGTTTCTCCCGCCCTAGGTATAAAAATGGCCTTAATTGCGGTGACGACGGTGGACGAAGTCGGTGGTTTTCCGGACAAGGAGGAAGCGAGAGGTGGTTGAAGGGTGCAAAACGGCGAGTCGTTCACGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

119

Amino Acids

13.33

Weight (kDa)

11.68

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	6 cut(s)	55, 126, 159, 211, 235, 264
AclWI	GGATC	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	168, 240
AflIII	ACRYGT	2 cut(s)	95, 97
AgsI	TTSAA	2 cut(s)	196, 325
Alw26I	GTCTC	2 cut(s)	106, 181
AlwI	GGATC	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	124, 278
AvaII	GGWCC	1 cut(s)	171
AvrII	CCTAGG	1 cut(s)	239
BauI	CACGAG	1 cut(s)	350
BbrPI	CACGTG	1 cut(s)	98
BccI	CCATC	2 cut(s)	37, 149
BceAI	ACGGC	2 cut(s)	210, 353
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	106, 181
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	55
BlnI	CCTAGG	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	29, 98
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	167, 239
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 240
BseAI	TCCGGA	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	167, 239
BseLI	CCNNNNNNNGG	2 cut(s)	168, 240
BseRI	GAGGAG	4 cut(s)	32, 127, 169, 172
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	201, 297
BslI	CCNNNNNNNGG	2 cut(s)	168, 240
BsmAI	GTCTC	2 cut(s)	106, 181
BsmBI	CGTCTC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	163, 218
BspACI	CCGC	6 cut(s)	55, 126, 159, 211, 235, 264
BspANI	GGCC	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	356
BspPI	GGATC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	167, 239
BssMI	GATC	2 cut(s)	163, 218
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	166, 221
BstMAI	GTCTC	2 cut(s)	106, 181
BstMBI	GATC	2 cut(s)	163, 218
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 261
BstSCI	CCNGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	171
CpoI	CGGWCCG	1 cut(s)	171
CseI	GACGC	1 cut(s)	158
CspI	CGGWCCG	1 cut(s)	171
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	4 cut(s)	118, 199, 225, 255
CviKI_1	RGCY	4 cut(s)	118, 199, 225, 255
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	165, 220
DpnII	GATC	2 cut(s)	163, 218
EciI	GGCGGA	2 cut(s)	148, 200
Eco130I	CCWWGG	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	360
FaiI	YATR	2 cut(s)	246, 358
FatI	CATG	1 cut(s)	356
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	201, 297
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	3 cut(s)	84, 342, 353
HpaII	CCGG	2 cut(s)	201, 297
HphI	GGTGA	2 cut(s)	124, 278
Hpy166II	GTNNAC	2 cut(s)	278, 349
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	297, 350, 357
Hpy8I	GTNNAC	2 cut(s)	278, 349
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	25, 319
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	4, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 261
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	163, 218
LpnPI	CCDG	2 cut(s)	214, 310
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	165, 220
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	2 cut(s)	163, 218
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	296
MseI	TTAA	1 cut(s)	258
MspI	CCGG	2 cut(s)	201, 297
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	158, 261
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	163, 218
NlaIII	CATG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	84
PflFI	GACNNNGTC	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	56
Ple19I	CGATCG	1 cut(s)	221
PleI	GAGTC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	221
Rsr2I	CGGWCCG	1 cut(s)	171
RsrII	CGGWCCG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	163, 218
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	5 cut(s)	74, 100, 137, 245, 320
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	44, 113
SmoI	CTYRAG	2 cut(s)	44, 113
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	6 cut(s)	55, 126, 159, 211, 235, 264
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	217, 221
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	259
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	171
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.