Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

62523531 .. 62524011

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAAACCGCCGCGTTCACTCTCTCGCTGTCTCTCCCTCTCCTCAAGTCTCGCCGCTTCTCCTCCCAAACCTCCACCCTCAGATTCGCTCCCACACGTGTCTCCACCTCGCTCAAGCCTGACACCGTTCTCACTTCCTCCACCAATGATGCCCTCTCCGCCTCTCTCTCCCGCCGATCCTGGTCCGTCTCCTCCTCCGATGACTTCAAGCCCTGGACTTTTCCGGCCCTCGATTGGAGCCGTTTCTTCAGGCCTGGGTATAAAAATGGCCTTAAGGGCAGCGACGATGGTGGAGGAAGTCAGTGGTTTTCTGGACAAGGAGGAACCAGAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

113

Amino Acids

12.15

Weight (kDa)

10.9

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	5 cut(s)	9, 12, 55, 159, 172
AclWI	GGATC	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	232
AcvI	CACGTG	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	95, 97
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	179, 212, 253
Alw26I	GTCTC	4 cut(s)	36, 54, 106, 193
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	3 cut(s)	225, 251, 268
ApeKI	GCWGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	183, 226
AvaII	GGWCC	1 cut(s)	183
BbrPI	CACGTG	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	3 cut(s)	181, 214, 255
BcoDI	GTCTC	4 cut(s)	36, 54, 106, 193
BfrI	CTTAAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	3 cut(s)	12, 55, 280
BlsI	GCNGC	3 cut(s)	13, 56, 281
Bme1390I	CCNGG	3 cut(s)	181, 214, 255
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	183, 226
BmiI	GGNNCC	2 cut(s)	239, 325
BmrFI	CCNGG	3 cut(s)	181, 214, 255
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	2 cut(s)	29, 98
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	212, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	181, 214, 255
BseDI	CCNNGG	2 cut(s)	212, 254
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	94
BseRI	GAGGAG	4 cut(s)	32, 52, 181, 184
BseXI	GCAGC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	227, 253, 270
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	4 cut(s)	36, 54, 106, 193
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	227, 253, 270
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	5 cut(s)	9, 12, 55, 159, 172
BspANI	GGCC	3 cut(s)	227, 253, 270
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	239, 325
BspPI	GGATC	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	212, 254
BssMI	GATC	1 cut(s)	176
Bst2UI	CCWGG	3 cut(s)	181, 214, 255
Bst4CI	ACNGT	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	4 cut(s)	36, 54, 106, 193
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 276
BstNI	CCWGG	3 cut(s)	181, 214, 255
BstSCI	CCNGG	3 cut(s)	179, 212, 253
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	227, 253, 270
BtsIMutI	CAGTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	183, 226
CviJI	RGCY	6 cut(s)	118, 211, 227, 240, 253, 270
CviKI_1	RGCY	6 cut(s)	118, 211, 227, 240, 253, 270
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	179, 212, 253
Esp3I	CGTCTC	1 cut(s)	193
FaiI	YATR	1 cut(s)	261
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	12, 55, 280
Fsp4HI	GCNGC	3 cut(s)	12, 55, 280
GluI	GCNGC	3 cut(s)	12, 55, 280
HaeIII	GGCC	3 cut(s)	227, 253, 270
HapII	CCGG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	83, 199
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 276
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	94, 237
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	97
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	238
MseI	TTAA	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	3 cut(s)	181, 214, 255
MvaI	CCWGG	3 cut(s)	181, 214, 255
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	158, 276
NdeII	GATC	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	239, 325
PceI	AGGCCT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	13, 56, 281
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	179, 212, 253
PspCI	CACGTG	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	179, 212, 253
PspN4I	GGNNCC	2 cut(s)	239, 325
PspPI	GGNCC	2 cut(s)	183, 226
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	12, 55, 280
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	2 cut(s)	183, 226
ScrFI	CCNGG	3 cut(s)	181, 214, 255
SetI	ASST	4 cut(s)	74, 100, 110, 334
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	44, 113, 272
SmoI	CTYRAG	3 cut(s)	44, 113, 272
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	5 cut(s)	9, 12, 55, 159, 172
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	3 cut(s)	179, 212, 253
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	2 cut(s)	14, 57
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	308
TseI	GCWGC	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.