Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

69818476 .. 69820345

Gene Structure 1870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG437900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGTTCATGGCAGATCTTTGTCTGCTTATTCTTTTCGTCATATGTCTAGGTGGGGATAAATCTGTGTCAGTTTTGTTTGCTAGTGCCGAGTGTGTTGGATCCGTGATGGTGGTAGATCGTGTTGCGTGGCCGGGTTTAGGGCGCAAGGTGATAGACTTGTCTTCTGTTAGGCATGTCTGGGACTGGCGGTGTGGCTTCAGTGCTAACATGCTGACGGCGGAGAAGCTCTGGATGATGGAACTGTTAGGTAAAGGGTCGTCACCAACTGTGGGCGGCGGTGTTTGCGTTAGCATCATACATGGTCTGAAGGTAGGTGTGGAGGTGGACTACGACAGCGACCACAACATGGTGGAGGAGGCTGCGGTGATCTTCAACTACGATCGCGGGCATGTCCTCCCTTCTTTTGTTCTGCTGGTTCGTGGGCGGCGGTGGCGGGAGTGCCTTCCTGTGTGCCCATCTGACTTTTCTTTGCGGCTTTCTTCTGGGTCCAAGGATCATGATGGATGCTGGACATTGGCTGCATCCGGCGTCATCTCGTTTGGGAGACAGTCTTGTGGCGGGGATTTTATTGTGGTACTAACGAAGATCGTCAGGGTTGGTGTCAGCAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.27

Weight (kDa)

6.5

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	1 cut(s)	387
AclWI	GGATC	3 cut(s)	96, 109, 504
AcoI	YGGCCR	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	184, 329
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	140, 272, 349
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	3 cut(s)	96, 109, 504
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	362, 521
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	163, 255, 379
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	349, 508
BccI	CCATC	4 cut(s)	103, 232, 466, 497
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	2 cut(s)	50, 84
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	5 cut(s)	277, 363, 428, 476, 522
BlsI	GCNGC	5 cut(s)	278, 364, 429, 477, 523
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	103, 490
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	303, 497, 533
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 272, 349
Bse1I	ACTGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	240, 512, 524
BseLI	CCNNNNNNNGG	3 cut(s)	140, 272, 349
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	349, 508
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	134, 528
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	140, 272, 349
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
BspANI	GGCC	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	103, 490
BspPI	GGATC	3 cut(s)	96, 109, 504
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	246, 271, 552
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	240, 512, 524
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	7 cut(s)	19, 104, 121, 372, 385, 499, 591
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 433
BstNSI	RCATGY	3 cut(s)	179, 214, 395
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	349, 508
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	16, 101
BstYI	RGATCY	2 cut(s)	16, 101
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	240, 512, 524
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	7 cut(s)	10, 176, 211, 302, 349, 392, 500
CviJI	RGCY	6 cut(s)	133, 198, 229, 362, 478, 521
CviKI_1	RGCY	6 cut(s)	133, 198, 229, 362, 478, 521
CviQI	GTAC	1 cut(s)	578
DpnI	GATC	7 cut(s)	18, 103, 120, 371, 384, 498, 590
DpnII	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
EaeI	YGGCCR	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	2 cut(s)	184, 329
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	7 cut(s)	13, 179, 214, 305, 352, 395, 503
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	7 cut(s)	9, 175, 210, 301, 348, 391, 499
FauI	CCCGC	3 cut(s)	380, 429, 554
FauNDI	CATATG	1 cut(s)	44
Fnu4HI	GCNGC	5 cut(s)	277, 363, 428, 476, 522
FokI	GGATG	3 cut(s)	247, 511, 519
Fsp4HI	GCNGC	5 cut(s)	277, 363, 428, 476, 522
FspBI	CTAG	2 cut(s)	50, 84
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	5 cut(s)	277, 363, 428, 476, 522
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	134, 528
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	7 cut(s)	13, 179, 214, 305, 352, 395, 503
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	134, 528
HphI	GGTGA	3 cut(s)	163, 255, 379
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	309, 463
Hpy188III	TCNNGA	2 cut(s)	232, 500
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	304, 411, 455
HpyCH4III	ACNGT	3 cut(s)	246, 271, 552
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 433
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	7 cut(s)	13, 179, 214, 305, 352, 395, 503
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
Lsp1109I	GCAGC	2 cut(s)	349, 508
LweI	GCATC	3 cut(s)	303, 497, 533
MaeI	CTAG	2 cut(s)	50, 84
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	7 cut(s)	18, 103, 120, 371, 384, 498, 590
MboI	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
MboII	GAAGA	4 cut(s)	156, 364, 474, 598
MflI	RGATCY	2 cut(s)	16, 101
MhlI	GDGCHC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	316, 349, 352, 407
MspI	CCGG	2 cut(s)	134, 528
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	285, 433
NciI	CCSGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
NlaIII	CATG	7 cut(s)	13, 179, 214, 305, 352, 395, 503
NlaIV	GGNNCC	2 cut(s)	103, 490
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	261
NspI	RCATGY	3 cut(s)	179, 214, 395
PagI	TCATGA	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	5 cut(s)	278, 364, 429, 477, 523
Ple19I	CGATCG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	103, 490
PspPI	GGNCC	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	16, 101
PvuI	CGATCG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SatI	GCNGC	5 cut(s)	277, 363, 428, 476, 522
Sau3AI	GATC	7 cut(s)	16, 101, 118, 369, 382, 496, 588
Sau96I	GGNCC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	8 cut(s)	55, 153, 231, 253, 315, 319, 327, 617
SfaNI	GCATC	3 cut(s)	303, 497, 533
SinI	GGWCC	1 cut(s)	489
SspMI	CTAG	2 cut(s)	50, 84
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	246, 271, 552
TauI	GCSGC	3 cut(s)	279, 430, 478
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	2 cut(s)	362, 521
Tsp45I	GTSAC	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	489
XceI	RCATGY	3 cut(s)	179, 214, 395
XspI	CTAG	2 cut(s)	50, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.