Rh2AG436900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001695
Physical Location & Seq
Forward (+)
64775134 .. 64775439
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG436900.1

Sequence Viewer

Length: 306 bp
ATGTCTCCACCTAGCTCAAGCCTGACACCGCTCTCGCCTCCTCCGCCAATGACGCCCTCTCCGCCTCTCTCTCCTGTCGATCCTGGTCTGTCTCCTCCTCCGATGACTTCAAGCCCTGGACTTCTCCGGCCCTCGATCGGAGAAGTTTCTCCTGTCCTGGGTATAAAAATGGCCTTAAAGGCAGCGACGACAGTGGAGGAAGTCAGTGGTTTTCTGGACAAGGAGGAAGCAGAGGTGGTTGAAGGATGCAAAACGGCGAGTCGTTCGCAAAGGCATGACGGGCATATGCCAGAAATTCTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.48

Weight (kDa)

4.98

Isoelectric Point (pI)

100.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 3 cut(s) 29, 44, 62
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 137, 158
AgsI TTSAA 2 cut(s) 111, 242
AjnI CCWGG 3 cut(s) 82, 115, 156
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 9, 96
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 128, 171
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 3 cut(s) 84, 117, 158
BcoDI GTCTC 2 cut(s) 9, 96
BfaI CTAG 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 84, 117, 158
BmgT120I GGNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 84, 117, 158
BmsI GCATC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 115, 157
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 158
BseBI CCWGG 3 cut(s) 84, 117, 158
BseDI CCNNGG 2 cut(s) 115, 157
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 137, 158
BseRI GAGGAG 3 cut(s) 30, 84, 87
BseXI GCAGC 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 130, 173
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 137, 158
BsmAI GTCTC 2 cut(s) 9, 96
BsnI GGCC 2 cut(s) 130, 173
Bsp143I GATC 2 cut(s) 79, 135
BspACI CCGC 3 cut(s) 29, 44, 62
BspANI GGCC 2 cut(s) 130, 173
BspPI GGATC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 115, 157
BssMI GATC 2 cut(s) 79, 135
BssNI GRCGYC 1 cut(s) 53
Bst2UI CCWGG 3 cut(s) 84, 117, 158
Bst4CI ACNGT 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 2 cut(s) 82, 138
BstMAI GTCTC 2 cut(s) 9, 96
BstMBI GATC 2 cut(s) 79, 135
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 179, 280
BstNI CCWGG 3 cut(s) 84, 117, 158
BstSCI CCNGG 3 cut(s) 82, 115, 156
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 130, 173
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 198, 211
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 1 cut(s) 61
CviAII CATG 1 cut(s) 275
CviJI RGCY 5 cut(s) 15, 21, 114, 130, 173
CviKI_1 RGCY 5 cut(s) 15, 21, 114, 130, 173
DpnI GATC 2 cut(s) 81, 137
DpnII GATC 2 cut(s) 79, 135
EciI GGCGGA 2 cut(s) 33, 51
EcoRII CCWGG 3 cut(s) 82, 115, 156
FaeI CATG 1 cut(s) 278
FaiI YATR 4 cut(s) 164, 276, 285, 287
FatI CATG 1 cut(s) 274
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 130, 173
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 278
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 102, 140
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 179, 280
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 2 cut(s) 79, 135
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 12
MalI GATC 2 cut(s) 81, 137
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 79, 135
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 268
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 3 cut(s) 84, 117, 158
MvaI CCWGG 3 cut(s) 84, 117, 158
MwoI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 179, 280
NdeI CATATG 1 cut(s) 285
NdeII GATC 2 cut(s) 79, 135
NlaIII CATG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 82, 115, 156
PspGI CCWGG 3 cut(s) 82, 115, 156
PspPI GGNCC 1 cut(s) 129
PvuI CGATCG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 79, 135
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 3 cut(s) 84, 117, 158
SetI ASST 3 cut(s) 13, 17, 237
SfaNI GCATC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 294
SsiI CCGC 3 cut(s) 29, 44, 62
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 82, 115, 156
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 78, 134
TasI AATT 1 cut(s) 294
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 198, 211
TseI GCWGC 1 cut(s) 182
TspRI CASTG 2 cut(s) 198, 211
XapI RAATTY 1 cut(s) 294
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.