Rh2CG071600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001695
Physical Location & Seq
Forward (+)
5866182 .. 5866511
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG071600.1

Sequence Viewer

Length: 330 bp
ATGACAAATCTTGGTTTGCTCGTCCTTTACTTCTTTTGTCTGGGTGGTGTTGGTTCTGGTTTGTTTTCAATTTTTGATGGAGGGAGTGCTCTGTTTGGTGGGACTTTTCCCGGACGTGGTGGTGGCACAGCTACGGGTTTCAGCAAGGCTGACTCGGTGGTTTTAGCGGTGGTCAACTGCGTGTTTGGGAGGCCGGGTTCTCGACGTAGGACCATGGATCTGGCTTCTGCTAGGCTGGGATGGATTTCTGGTGGGATGGATTTGGTCTGGTCCTGGTTTGCTGGTGTGATTGTACGTTGTTTGGGCGGAGGTGGATCTGCTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.07

Weight (kDa)

9.6

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 167, 306
AclWI GGATC 2 cut(s) 225, 322
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 69
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 272
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 2 cut(s) 225, 322
AoxI GGCC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 210, 270
AsuC2I CCSGG 2 cut(s) 111, 195
AvaII GGWCC 2 cut(s) 210, 270
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 3 cut(s) 71, 234, 250
BciT130I CCWGG 1 cut(s) 274
BcnI CCSGG 2 cut(s) 111, 195
BfaI CTAG 1 cut(s) 231
Bme1390I CCNGG 3 cut(s) 111, 195, 274
Bme18I GGWCC 2 cut(s) 210, 270
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 210, 270
BmrFI CCNGG 3 cut(s) 111, 195, 274
BpuMI CCSGG 2 cut(s) 111, 195
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 245, 261
BseLI CCNNNNNNNGG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 111, 194
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 217, 314
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 2 cut(s) 167, 306
BspANI GGCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 225, 322
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 217, 314
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 245, 261
BstKTI GATC 2 cut(s) 220, 317
BstMBI GATC 2 cut(s) 217, 314
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 109, 193, 272
BstX2I RGATCY 2 cut(s) 217, 314
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 217, 314
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 245, 261
Cfr13I GGNCC 2 cut(s) 210, 270
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 214
CviJI RGCY 5 cut(s) 131, 149, 193, 224, 235
CviKI_1 RGCY 5 cut(s) 131, 149, 193, 224, 235
CviQI GTAC 1 cut(s) 293
DpnI GATC 2 cut(s) 219, 316
DpnII GATC 2 cut(s) 217, 314
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 210, 270
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 217
FaiI YATR 1 cut(s) 215
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 213
FokI GGATG 2 cut(s) 252, 268
FspBI CTAG 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 193
HapII CCGG 2 cut(s) 111, 194
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 111, 194
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 207
HpyCH4IV ACGT 3 cut(s) 115, 205, 295
HpySE526I ACGT 3 cut(s) 115, 205, 295
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 2 cut(s) 217, 314
LmnI GCTCC 1 cut(s) 325
MaeI CTAG 1 cut(s) 231
MaeII ACGT 3 cut(s) 115, 205, 295
MalI GATC 2 cut(s) 219, 316
MboI GATC 2 cut(s) 217, 314
MflI RGATCY 2 cut(s) 217, 314
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 3 cut(s) 74, 183, 302
MspI CCGG 2 cut(s) 111, 194
MspR9I CCNGG 3 cut(s) 111, 195, 274
MvaI CCWGG 1 cut(s) 274
NciI CCSGG 2 cut(s) 111, 195
NcoI CCATGG 1 cut(s) 213
NdeII GATC 2 cut(s) 217, 314
NlaIII CATG 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 109
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 2 cut(s) 210, 270
PsuI RGATCY 2 cut(s) 217, 314
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 217, 314
Sau96I GGNCC 2 cut(s) 210, 270
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 111, 195, 274
SduI GDGCHC 1 cut(s) 91
SetI ASST 5 cut(s) 118, 133, 208, 298, 313
SinI GGWCC 2 cut(s) 210, 270
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 167, 306
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 109, 193, 272
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 3 cut(s) 118, 208, 298
TaqI TCGA 1 cut(s) 202
TasI AATT 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 210, 270
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.