Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

32244166 .. 32245197

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGACCGCCGCCTTCACTCTCTCGCCTTCTCTCCCTCTCCTCAAGTCTCGCCGCCTCTCCGCCCAAACCTGCACCCTCAGATTCGATCCCACATGTGTCTCCGCCTCGCTCAAGCCTGACGCCACTCTCACCTCCTCCACCAATGACGCCCTCTCCGCCTCTCTCTCCCGCCAATCCTGGTCCGTCTCCTCCTCCGATGACTTCAAGCCCTGGACTTCTCCGGCCCTCGATCGGAGCCGTTTCTCCGGCCTTGGGTATAAAAATGGCCTTAATTGTAGCGACGACGGTGGAGGAAGTCAGTGGTTTTCTGGACAAGGAGGAAGCAAGGTGGTTGAAGGGTGCAAAATGGCGAATCATTCGCAGAGGCATGACTGGCAGAAGCTGGAAATTCTTCTTCGGGTGGCAGTCGCAGGAGATAGTGGTATAGTGGTGTCGGCGTTGGAGTTTGGATGCGGTGGAAGAGGCGGTATAAGAGGGCGTGGTGGCGGGAACCTCGGGCTTGACGAAGGAGGATTGAAAAACTGTTTGATGCCACCGTCGATGGCCTCTACTACCAGATGGTGCATAGTGCGAGCTATGGTGGCCATTGTAGATGATGAGCTGGAGGATGAAGAGAGTGCGATGAAGGAAAAAAGGAAGAAGAGGACAACAGTGGAGAATGAGGAGTTAAGGACGGCTGATGCGAAGTTGCGAACCATTAGGGGCACATTAGGAATTTACCCCTTCATGTGGGCCCACTGGCTGGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

252

Amino Acids

27.12

Weight (kDa)

8.69

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	745
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	2 cut(s)	390, 717
AcyI	GRCGYC	2 cut(s)	123, 150
AfiI	CCNNNNNNNGG	4 cut(s)	234, 255, 732, 745
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	208, 338, 520
AjnI	CCWGG	2 cut(s)	179, 212
AluBI	AGCT	3 cut(s)	385, 578, 604
AluI	AGCT	3 cut(s)	385, 578, 604
Alw26I	GTCTC	3 cut(s)	54, 106, 193
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	6 cut(s)	225, 250, 268, 546, 585, 735
ApaI	GGGCCC	1 cut(s)	739
ApoI	RAATTY	2 cut(s)	390, 717
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	4 cut(s)	183, 226, 735, 736
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	710, 739
BalI	TGGCCA	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	739
BccI	CCATC	2 cut(s)	538, 555
BceAI	ACGGC	2 cut(s)	225, 693
BciT130I	CCWGG	2 cut(s)	181, 214
BcoDI	GTCTC	3 cut(s)	54, 106, 193
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	12, 55
BlsI	GCNGC	2 cut(s)	13, 56
Bme1390I	CCNGG	2 cut(s)	181, 214
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	4 cut(s)	183, 226, 735, 736
BmiI	GGNNCC	3 cut(s)	239, 494, 737
BmrFI	CCNGG	2 cut(s)	181, 214
BmsI	GCATC	3 cut(s)	443, 522, 673
BpmI	CTGGAG	1 cut(s)	626
BpuEI	CTTGAG	2 cut(s)	29, 98
BsaHI	GRCGYC	2 cut(s)	123, 150
BsaJI	CCNNGG	3 cut(s)	212, 253, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 255, 732, 745
Bse1I	ACTGG	2 cut(s)	380, 746
BseBI	CCWGG	2 cut(s)	181, 214
BseDI	CCNNGG	3 cut(s)	212, 253, 496
BseGI	GGATG	2 cut(s)	458, 616
BseLI	CCNNNNNNNGG	4 cut(s)	234, 255, 732, 745
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	380, 746
BseRI	GAGGAG	5 cut(s)	32, 127, 181, 184, 680
BseSI	GKGCMC	2 cut(s)	710, 739
BseYI	CCCAGC	1 cut(s)	745
BsgI	GTGCAG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	6 cut(s)	227, 252, 270, 548, 587, 737
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	224, 249
BslI	CCNNNNNNNGG	4 cut(s)	234, 255, 732, 745
BsmAI	GTCTC	3 cut(s)	54, 106, 193
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	6 cut(s)	227, 252, 270, 548, 587, 737
BsoBI	CYCGRG	1 cut(s)	497
Bsp120I	GGGCCC	1 cut(s)	735
Bsp1286I	GDGCHC	2 cut(s)	710, 739
Bsp143I	GATC	2 cut(s)	88, 232
BspANI	GGCC	6 cut(s)	227, 252, 270, 548, 587, 737
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	239, 494, 737
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	380, 746
BssECI	CCNNGG	3 cut(s)	212, 253, 496
BssMI	GATC	2 cut(s)	88, 232
BssNI	GRCGYC	2 cut(s)	123, 150
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	181, 214
Bst4CI	ACNGT	4 cut(s)	290, 527, 540, 655
Bst6I	CTCTTC	3 cut(s)	457, 609, 638
BstACI	GRCGYC	2 cut(s)	123, 150
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	458, 616
BstKTI	GATC	2 cut(s)	91, 235
BstMAI	GTCTC	3 cut(s)	54, 106, 193
BstMBI	GATC	2 cut(s)	88, 232
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 376, 584
BstNI	CCWGG	2 cut(s)	181, 214
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	179, 212
BstSLI	GKGCMC	2 cut(s)	710, 739
BsuRI	GGCC	6 cut(s)	227, 252, 270, 548, 587, 737
BtgZI	GCGATG	1 cut(s)	638
BtsCI	GGATG	2 cut(s)	458, 616
BtsIMutI	CAGTG	3 cut(s)	308, 660, 739
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	4 cut(s)	183, 226, 735, 736
CseI	GACGC	2 cut(s)	131, 158
CviAII	CATG	3 cut(s)	96, 371, 730
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	90, 234
DpnII	GATC	2 cut(s)	88, 232
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	3 cut(s)	457, 609, 638
EarI	CTCTTC	3 cut(s)	457, 609, 638
EciI	GGCGGA	3 cut(s)	52, 94, 148
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	179, 212
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	99, 374, 733
FaiI	YATR	8 cut(s)	97, 261, 372, 428, 473, 569, 581, 731
FatI	CATG	3 cut(s)	95, 370, 729
FauI	CCCGC	2 cut(s)	179, 482
Fnu4HI	GCNGC	2 cut(s)	12, 55
FokI	GGATG	2 cut(s)	465, 623
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	2 cut(s)	12, 55
GluI	GCNGC	2 cut(s)	12, 55
GsaI	CCCAGC	1 cut(s)	749
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	6 cut(s)	227, 252, 270, 548, 587, 737
HapII	CCGG	2 cut(s)	224, 249
HgaI	GACGC	2 cut(s)	131, 158
Hin1I	GRCGYC	2 cut(s)	123, 150
Hin1II	CATG	3 cut(s)	99, 374, 733
HinfI	GANTC	2 cut(s)	84, 355
HpaII	CCGG	2 cut(s)	224, 249
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	83, 199, 237
Hpy188III	TCNNGA	1 cut(s)	312
Hpy99I	CGWCG	3 cut(s)	287, 290, 544
HpyAV	CCTTC	6 cut(s)	25, 39, 332, 503, 622, 736
HpyCH4III	ACNGT	4 cut(s)	290, 527, 540, 655
HpyCH4V	TGCA	4 cut(s)	4, 75, 345, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 376, 584
HpyF3I	CTNAG	1 cut(s)	80
Hsp92I	GRCGYC	2 cut(s)	123, 150
Hsp92II	CATG	3 cut(s)	99, 374, 733
Kzo9I	GATC	2 cut(s)	88, 232
LmnI	GCTCC	1 cut(s)	237
LweI	GCATC	3 cut(s)	443, 522, 673
MalI	GATC	2 cut(s)	90, 234
MboI	GATC	2 cut(s)	88, 232
MboII	GAAGA	6 cut(s)	386, 389, 474, 626, 652, 655
MhlI	GDGCHC	2 cut(s)	710, 739
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	3 cut(s)	274, 390, 717
MluNI	TGGCCA	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	423
Mox20I	TGGCCA	1 cut(s)	587
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	2 cut(s)	273, 671
Msp20I	TGGCCA	1 cut(s)	587
MspI	CCGG	2 cut(s)	224, 249
MspR9I	CCNGG	2 cut(s)	181, 214
MvaI	CCWGG	2 cut(s)	181, 214
MwoI	GCNNNNNNNGC	3 cut(s)	158, 376, 584
NdeII	GATC	2 cut(s)	88, 232
NlaIII	CATG	3 cut(s)	99, 374, 733
NlaIV	GGNNCC	3 cut(s)	239, 494, 737
NspI	RCATGY	1 cut(s)	99
PciI	ACATGT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	504, 683
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	84, 355
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	2 cut(s)	13, 56
Ple19I	CGATCG	1 cut(s)	235
PscI	ACATGT	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	179, 212
PspFI	CCCAGC	1 cut(s)	745
PspGI	CCWGG	2 cut(s)	179, 212
PspN4I	GGNNCC	3 cut(s)	239, 494, 737
PspOMI	GGGCCC	1 cut(s)	735
PspPI	GGNCC	4 cut(s)	183, 226, 735, 736
PstNI	CAGNNNCTG	1 cut(s)	385
PvuI	CGATCG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	273, 671
SatI	GCNGC	2 cut(s)	12, 55
Sau3AI	GATC	2 cut(s)	88, 232
Sau96I	GGNCC	4 cut(s)	183, 226, 735, 736
ScrFI	CCNGG	2 cut(s)	181, 214
SduI	GDGCHC	2 cut(s)	710, 739
SetI	ASST	7 cut(s)	74, 137, 333, 387, 498, 580, 606
SfaNI	GCATC	3 cut(s)	443, 522, 673
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	44, 113
SmoI	CTYRAG	2 cut(s)	44, 113
Sse9I	AATT	3 cut(s)	274, 390, 717
StyD4I	CCNGG	2 cut(s)	179, 212
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	290, 527, 540, 655
TaqI	TCGA	3 cut(s)	87, 231, 542
TasI	AATT	3 cut(s)	274, 390, 717
TauI	GCSGC	2 cut(s)	14, 57
TfiI	GAWTC	2 cut(s)	84, 355
Tru1I	TTAA	2 cut(s)	273, 671
Tru9I	TTAA	2 cut(s)	273, 671
TscAI	CASTG	3 cut(s)	308, 660, 746
TspDTI	ATGAA	3 cut(s)	627, 641, 718
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	308, 660, 746
Van91I	CCANNNNNTGG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	390, 717
XceI	RCATGY	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.