Rh6DG435700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001695
Physical Location & Seq
Reverse (-)
61412461 .. 61413546
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG435700.1

Sequence Viewer

Length: 453 bp
ATGGAGCTTTCTTCAGGCTGCGGCCTCGTCGTGTTTGCCTTCGTTGTGGTCGTGGGCACAGTGTGTGTTGAGGGGATTCTTGGTCCTGGTGTTTATTTATCAGAGAGCCAAGAGAGTGCTGGATCGTTGCAGCAGTTGGCGTCAAGCTTGGTGGCTGCGGGAGCGGGGATCAATGGTTGGGTACCTGTTGTCTGCGGCGGTGATAGCGTTCTCTGGCAGATTTGGGGTGGTTCTCTGTTCGCTACTTCGACAGTTGAGGATGATGTGATCAGAGGCGAATCCAGTCCTTCTTCAGTGGCAGAGGTCATTGAAGGCGGGCTGAGATTAGGTTTTGACGATGGTGGTAGAGTCCGTCTTGTTGGTGGTGGAGGGTCGGATCTCTTGCCTTTCCTCCATGGTCGTCTTAAAGGGCCGACTTATCTCGGCGAGGATAGTGGCATTTCGATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.13

Weight (kDa)

4.18

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 6 cut(s) 21, 158, 164, 195, 198, 315
AclWI GGATC 3 cut(s) 130, 176, 384
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 63
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 7, 147
AluI AGCT 2 cut(s) 7, 147
AlwI GGATC 3 cut(s) 130, 176, 384
AoxI GGCC 2 cut(s) 22, 410
ApeKI GCWGC 3 cut(s) 18, 130, 155
Asp718I GGTACC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 83, 410
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 5, 142, 142
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 87
BclI TGATCA 1 cut(s) 267
BisI GCNGC 5 cut(s) 19, 22, 131, 156, 196
BlsI GCNGC 5 cut(s) 20, 23, 132, 157, 197
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 410
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 3 cut(s) 5, 142, 142
BshFI GGCC 2 cut(s) 24, 412
BshNI GGYRCC 1 cut(s) 181
BsnI GGCC 2 cut(s) 24, 412
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 122, 168, 267, 376
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 6 cut(s) 21, 158, 164, 195, 198, 315
BspANI GGCC 2 cut(s) 24, 412
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 3 cut(s) 130, 176, 384
BspT107I GGYRCC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 122, 168, 267, 376
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 61, 253
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 4 cut(s) 125, 171, 270, 379
BstMBI GATC 4 cut(s) 122, 168, 267, 376
BstMWI GCNNNNNNNGC 2 cut(s) 161, 204
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 5, 142, 142
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 2 cut(s) 24, 412
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 66, 300
Cac8I GCNNGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 83, 410
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 182
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 1 cut(s) 395
CviJI RGCY 8 cut(s) 7, 18, 24, 108, 147, 155, 319, 412
CviKI_1 RGCY 8 cut(s) 7, 18, 24, 108, 147, 155, 319, 412
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 320
DpnI GATC 4 cut(s) 124, 170, 269, 378
DpnII GATC 4 cut(s) 122, 168, 267, 376
DraIII CACNNNGTG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 394
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 85
EcoRV GATATC 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 398
FaiI YATR 2 cut(s) 396, 451
FatI CATG 1 cut(s) 394
FauI CCCGC 3 cut(s) 151, 157, 308
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 19, 22, 131, 156, 196
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 19, 22, 131, 156, 196
GluI GCNGC 5 cut(s) 19, 22, 131, 156, 196
HaeIII GGCC 2 cut(s) 24, 412
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 3 cut(s) 76, 278, 348
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 103, 272, 376
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 49, 297, 305
HpyCH4III ACNGT 2 cut(s) 61, 253
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 204
HpyF3I CTNAG 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 398
KpnI GGTACC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 122, 168, 267, 376
LmnI GCTCC 2 cut(s) 4, 161
LpnPI CCDG 6 cut(s) 72, 99, 105, 198, 199, 295
Lsp1109I GCAGC 3 cut(s) 5, 142, 142
MalI GATC 4 cut(s) 124, 170, 269, 378
MbiI CCGCTC 1 cut(s) 164
MboI GATC 4 cut(s) 122, 168, 267, 376
MboII GAAGA 2 cut(s) 3, 282
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 8 cut(s) 35, 64, 250, 266, 295, 362, 401, 421
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 161, 204
NcoI CCATGG 1 cut(s) 394
NdeII GATC 4 cut(s) 122, 168, 267, 376
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 183
NmeAIII GCCGAG 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 2 cut(s) 76, 278
PkrI GCNGC 5 cut(s) 20, 23, 132, 157, 197
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 83, 410
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 5 cut(s) 19, 22, 131, 156, 196
Sau3AI GATC 4 cut(s) 122, 168, 267, 376
Sau96I GGNCC 2 cut(s) 83, 410
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 9, 149, 187, 306, 331
SinI GGWCC 1 cut(s) 83
SsiI CCGC 6 cut(s) 21, 158, 164, 195, 198, 315
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 61, 253
TaqI TCGA 2 cut(s) 248, 443
TauI GCSGC 2 cut(s) 24, 198
TfiI GAWTC 2 cut(s) 76, 278
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 66, 300
TseI GCWGC 3 cut(s) 18, 130, 155
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 2 cut(s) 66, 300
VpaK11BI GGWCC 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.