Rh6BG498600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001695
Physical Location & Seq
Reverse (-)
69910374 .. 69914303
3930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG498600.1

Sequence Viewer

Length: 1167 bp
ATGGCCGACCTCTTTGAATATGACCCTTATCTATATCTAGAGTTTCATGCATATCTTCTACATCTCCAAAATCCAAAGCTTAGCTTGGTGGCTGCGAGAGCGGGGATCAGTGGTTGTCAGTTTGCTGCTTTGGCGGCCGAGGATGATGAGATCAGAGGCGAATCTAGTCCTTTGTTGGTGGCGGAGGTCATTGATGGCGGACTGAGATTAGGTTTTGACGATGGTGGTAGAGTCCGGCTTGATGGTGGTGGAAGGTGGGATCCGGGAGGGTCGGATCTCTTGCCTTTCTTTCATGGTTGTCTCAAAGGGCCGACTAATCTCGGCGAGGATGGTGGTATTTCGAGTGTGCTGTCGTCATCCAGAGGGGGTTTTCTTCGGCCATATATCCTGACGATGCTACTACCGAATTGTGGGTTCGCGGCTTATGATGTCGACTTTTTCTTCACAATTGATGACCTTCGTCGACGGAGTGGTACAAACAATGTTGCAGGCGACAGGCCACCGGGTAGTTTGGTGGACGGATGCCTTGCGGCTGTTTCTCCGCTCCTTGTTTTCGCTGTTGATCTGGTGGTGGTTGATCGGATTATGGCGCCAATTTGGGTGTCGTTTGGTAACGAGTTGGTGTTAGACAGATTAGGTTTTGCTGGTGTATTGGTGCAATGCACTGAGGGTTGTCGACTGTGTCTGCATTTGTTCAAGGATGAGGGTGGCCAGGTTGGTATGGGTTTTTCTATCAACGGTGGGCGAGTTGATTATGGCGGCGGTAACTTTTCTCTTGTGGAGGAGGAGCCGATCTTCTGGGCTCGAGTTCTTGAGGTCGTGCCTGGCTTGTTAACTGTTGATGGCAAGAGAGGATTGGGTGTTGCGGATGGGAAGGCTGCAGATGCTTGCGTTCATAGATTTGGCGGCTGGTCTTCAGGTGGCAATGCTGGCTGTGCTGGATCTCTGGTTGATGATCTTCTTCCCGAGCAAGACTGGTTGCAGTGGCTGGGAGTGTCCAACTGGGCCTGCTGGGCTTTCATGGTGGATGTGGGCCTCAGTACCTGGATTGGGTTTTGGGCCCAAAAGGCAATTAGAAGCAAGAATAGGTCTAAGCGTGCTAAAGACGAGCTACATACAGATGGTGGAACTGTTGGGGATGCTGGTGCATCATCCTCGATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

41.4

Weight (kDa)

4.72

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 589
AccBSI CCGCTC 2 cut(s) 101, 544
AccI GTMKAC 3 cut(s) 432, 463, 676
AccII CGCG 1 cut(s) 419
AclWI GGATC 5 cut(s) 113, 254, 267, 282, 949
AcoI YGGCCR 4 cut(s) 3, 135, 377, 709
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 2 cut(s) 475, 1042
AfiI CCNNNNNNNGG 2 cut(s) 410, 1050
AgsI TTSAA 2 cut(s) 17, 697
AjnI CCWGG 3 cut(s) 711, 823, 1043
AluBI AGCT 3 cut(s) 79, 84, 1111
AluI AGCT 3 cut(s) 79, 84, 1111
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 5 cut(s) 113, 254, 267, 282, 949
AlwNI CAGNNNCTG 2 cut(s) 988, 1044
Ama87I CYCGRG 2 cut(s) 804, 965
AoxI GGCC 9 cut(s) 3, 135, 308, 377, 497, 709, 1005, 1033, 1059
ApaI GGGCCC 1 cut(s) 1063
ApeKI GCWGC 3 cut(s) 92, 125, 878
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 5 cut(s) 308, 1005, 1033, 1059, 1060
AsuC2I CCSGG 2 cut(s) 264, 504
AvaI CYCGRG 2 cut(s) 804, 965
BaeGI GKGCMC 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 711
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 2 cut(s) 805, 1063
BbsI GAAGAC 1 cut(s) 906
BbvI GCAGC 3 cut(s) 79, 112, 865
BccI CCATC 7 cut(s) 188, 215, 236, 323, 836, 863, 1115
BcgI CGANNNNNNTGC 1 cut(s) 1137
BciT130I CCWGG 3 cut(s) 713, 825, 1045
BcnI CCSGG 2 cut(s) 264, 504
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 3 cut(s) 38, 165, 1165
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 593
BglI GCCNNNNNGGC 2 cut(s) 1013, 1067
BisI GCNGC 8 cut(s) 93, 126, 135, 420, 531, 760, 879, 907
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 8 cut(s) 94, 127, 136, 421, 532, 761, 880, 908
Bme1390I CCNGG 5 cut(s) 264, 504, 713, 825, 1045
BmeT110I CYCGRG 2 cut(s) 804, 965
BmgT120I GGNCC 5 cut(s) 308, 1005, 1033, 1059, 1060
BmiI GGNNCC 4 cut(s) 261, 591, 789, 1061
BmrFI CCNGG 5 cut(s) 264, 504, 713, 825, 1045
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 5 cut(s) 384, 512, 874, 1129, 1157
BmuI ACTGGG 1 cut(s) 1012
BoxI GACNNNNGTC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 2 cut(s) 264, 504
BsaHI GRCGYC 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 1050
Bse1I ACTGG 2 cut(s) 980, 1007
Bse3DI GCAATG 2 cut(s) 665, 931
BseBI CCWGG 3 cut(s) 713, 825, 1045
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 9 cut(s) 148, 334, 356, 527, 706, 874, 1033, 1144, 1151
BseLI CCNNNNNNNGG 2 cut(s) 410, 1050
BseMI GCAATG 2 cut(s) 665, 931
BseMII CTCAG 3 cut(s) 194, 657, 1051
BseNI ACTGG 2 cut(s) 980, 1007
BseRI GAGGAG 2 cut(s) 797, 800
BseSI GKGCMC 1 cut(s) 1063
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 79, 112, 865
BseYI CCCAGC 2 cut(s) 988, 1011
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 9 cut(s) 5, 137, 310, 379, 499, 711, 1007, 1035, 1061
BshNI GGYRCC 1 cut(s) 589
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 804, 965
BsiSI CCGG 3 cut(s) 235, 263, 503
BslI CCNNNNNNNGG 2 cut(s) 410, 1050
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 9 cut(s) 5, 137, 310, 379, 499, 711, 1007, 1035, 1061
BsoBI CYCGRG 2 cut(s) 804, 965
Bsp120I GGGCCC 1 cut(s) 1059
Bsp1286I GDGCHC 2 cut(s) 805, 1063
Bsp1720I GCTNAGC 1 cut(s) 80
BspANI GGCC 9 cut(s) 5, 137, 310, 379, 499, 711, 1007, 1035, 1061
BspCNI CTCAG 3 cut(s) 195, 658, 1050
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 4 cut(s) 261, 591, 789, 1061
BspMAI CTGCAG 1 cut(s) 883
BspPI GGATC 5 cut(s) 113, 254, 267, 282, 949
BspT107I GGYRCC 1 cut(s) 589
BsrBI CCGCTC 2 cut(s) 101, 544
BsrDI GCAATG 2 cut(s) 665, 931
BsrI ACTGG 2 cut(s) 980, 1007
BssECI CCNNGG 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 590
Bst2UI CCWGG 3 cut(s) 713, 825, 1045
Bst4CI ACNGT 4 cut(s) 681, 740, 838, 1132
BstACI GRCGYC 1 cut(s) 590
BstC8I GCNNGC 5 cut(s) 490, 889, 931, 1009, 1098
BstDEI CTNAG 5 cut(s) 80, 203, 666, 1037, 1092
BstF5I GGATG 9 cut(s) 148, 334, 356, 527, 706, 874, 1033, 1144, 1151
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 305
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 8 cut(s) 98, 131, 134, 884, 930, 935, 1013, 1067
BstNI CCWGG 3 cut(s) 713, 825, 1045
BstPAI GACNNNNGTC 1 cut(s) 459
BstSCI CCNGG 5 cut(s) 262, 502, 711, 823, 1043
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 1063
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 3 cut(s) 79, 112, 865
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 3 cut(s) 259, 274, 941
BstYI RGATCY 3 cut(s) 259, 274, 941
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 9 cut(s) 5, 137, 310, 379, 499, 711, 1007, 1035, 1061
BtsCI GGATG 9 cut(s) 148, 334, 356, 527, 706, 874, 1033, 1144, 1151
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 3 cut(s) 115, 663, 989
Cac8I GCNNGC 5 cut(s) 490, 889, 931, 1009, 1098
CaiI CAGNNNCTG 2 cut(s) 988, 1044
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 5 cut(s) 308, 1005, 1033, 1059, 1060
Csp6I GTAC 2 cut(s) 474, 1041
CviAII CATG 3 cut(s) 47, 293, 1021
CviQI GTAC 2 cut(s) 474, 1041
DdeI CTNAG 5 cut(s) 80, 203, 666, 1037, 1092
DinI GGCGCC 1 cut(s) 591
EaeI YGGCCR 4 cut(s) 3, 135, 377, 709
EagI CGGCCG 1 cut(s) 135
EciI GGCGGA 2 cut(s) 197, 213
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 805, 1063
Eco52I CGGCCG 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 900
Eco88I CYCGRG 2 cut(s) 804, 965
EcoRII CCWGG 3 cut(s) 711, 823, 1043
EcoT22I ATGCAT 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 805, 1063
EgeI GGCGCC 1 cut(s) 591
EheI GGCGCC 1 cut(s) 591
FaeI CATG 3 cut(s) 50, 296, 1024
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 3 cut(s) 46, 292, 1020
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 3 cut(s) 432, 463, 676
Fnu4HI GCNGC 8 cut(s) 93, 126, 135, 420, 531, 760, 879, 907
FokI GGATG 9 cut(s) 155, 341, 343, 534, 713, 881, 1040, 1138, 1151
FriOI GRGCYC 2 cut(s) 805, 1063
Fsp4HI GCNGC 8 cut(s) 93, 126, 135, 420, 531, 760, 879, 907
FspBI CTAG 3 cut(s) 38, 165, 1165
GlaI GCGC 1 cut(s) 591
GluI GCNGC 8 cut(s) 93, 126, 135, 420, 531, 760, 879, 907
GsaI CCCAGC 2 cut(s) 992, 1015
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 9 cut(s) 5, 137, 310, 379, 499, 711, 1007, 1035, 1061
HapII CCGG 3 cut(s) 235, 263, 503
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 3 cut(s) 50, 296, 1024
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 4 cut(s) 433, 464, 677, 834
HindII GTYRAC 4 cut(s) 433, 464, 677, 834
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 161, 231
HpaI GTTAAC 1 cut(s) 834
HpaII CCGG 3 cut(s) 235, 263, 503
Hpy166II GTNNAC 5 cut(s) 433, 464, 517, 677, 834
Hpy188I TCNGA 3 cut(s) 155, 274, 582
Hpy188III TCNNGA 5 cut(s) 38, 360, 388, 812, 965
Hpy8I GTNNAC 5 cut(s) 433, 464, 517, 677, 834
Hpy99I CGWCG 2 cut(s) 465, 468
HpyAV CCTTC 3 cut(s) 246, 467, 868
HpyCH4III ACNGT 4 cut(s) 681, 740, 838, 1132
HpyCH4V TGCA 8 cut(s) 50, 488, 658, 663, 688, 881, 982, 1148
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 131, 134, 884, 930, 935, 1013, 1067
HpyF3I CTNAG 5 cut(s) 80, 203, 666, 1037, 1092
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 3 cut(s) 50, 296, 1024
HspAI GCGC 1 cut(s) 590
KasI GGCGCC 1 cut(s) 589
KspAI GTTAAC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 549, 787
Lsp1109I GCAGC 3 cut(s) 79, 112, 865
LweI GCATC 5 cut(s) 384, 512, 874, 1129, 1157
MaeI CTAG 3 cut(s) 38, 165, 1165
MaeIII GTNAC 2 cut(s) 611, 764
MbiI CCGCTC 2 cut(s) 101, 544
MboII GAAGA 7 cut(s) 47, 365, 433, 787, 906, 950, 953
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 3 cut(s) 259, 274, 941
MhlI GDGCHC 2 cut(s) 805, 1063
MlsI TGGCCA 1 cut(s) 711
MluCI AATT 4 cut(s) 406, 447, 594, 1071
MluNI TGGCCA 1 cut(s) 711
Mly113I GGCGCC 1 cut(s) 590
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 252, 1023
Mox20I TGGCCA 1 cut(s) 711
Mph1103I ATGCAT 1 cut(s) 52
MscI TGGCCA 1 cut(s) 711
MseI TTAA 1 cut(s) 833
MslI CAYNNNNRTG 1 cut(s) 1119
Msp20I TGGCCA 1 cut(s) 711
MspI CCGG 3 cut(s) 235, 263, 503
MspR9I CCNGG 5 cut(s) 264, 504, 713, 825, 1045
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 3 cut(s) 713, 825, 1045
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 8 cut(s) 98, 131, 134, 884, 930, 935, 1013, 1067
NarI GGCGCC 1 cut(s) 590
NciI CCSGG 2 cut(s) 264, 504
NlaIII CATG 3 cut(s) 50, 296, 1024
NlaIV GGNNCC 4 cut(s) 261, 591, 789, 1061
NmeAIII GCCGAG 2 cut(s) 163, 300
NsiI ATGCAT 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 804
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 681
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 8 cut(s) 94, 127, 136, 421, 532, 761, 880, 908
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 711, 823, 1043
PspFI CCCAGC 2 cut(s) 988, 1011
PspGI CCWGG 3 cut(s) 711, 823, 1043
PspN4I GGNNCC 4 cut(s) 261, 591, 789, 1061
PspOMI GGGCCC 1 cut(s) 1059
PspPI GGNCC 5 cut(s) 308, 1005, 1033, 1059, 1060
PspXI VCTCGAGB 1 cut(s) 804
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 2 cut(s) 988, 1044
PsuI RGATCY 3 cut(s) 259, 274, 941
PsyI GACNNNGTC 1 cut(s) 681
RsaI GTAC 2 cut(s) 475, 1042
RsaNI GTAC 2 cut(s) 474, 1041
RseI CAYNNNNRTG 1 cut(s) 1119
SalI GTCGAC 3 cut(s) 431, 462, 675
SaqAI TTAA 1 cut(s) 833
SatI GCNGC 8 cut(s) 93, 126, 135, 420, 531, 760, 879, 907
Sau96I GGNCC 5 cut(s) 308, 1005, 1033, 1059, 1060
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 5 cut(s) 264, 504, 713, 825, 1045
SduI GDGCHC 2 cut(s) 805, 1063
SfaNI GCATC 5 cut(s) 384, 512, 874, 1129, 1157
SfcI CTRYAG 1 cut(s) 879
SfoI GGCGCC 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 804
SgrDI CGTCGACG 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 1119
SmlI CTYRAG 2 cut(s) 804, 812
SmoI CTYRAG 2 cut(s) 804, 812
Sse9I AATT 4 cut(s) 406, 447, 594, 1071
SspDI GGCGCC 1 cut(s) 589
SspMI CTAG 3 cut(s) 38, 165, 1165
StyD4I CCNGG 5 cut(s) 262, 502, 711, 823, 1043
TaaI ACNGT 4 cut(s) 681, 740, 838, 1132
TaqI TCGA 6 cut(s) 341, 432, 463, 676, 805, 1157
TasI AATT 4 cut(s) 406, 447, 594, 1071
TauI GCSGC 5 cut(s) 137, 422, 533, 762, 909
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 833
Tru9I TTAA 1 cut(s) 833
TscAI CASTG 3 cut(s) 115, 670, 989
TseI GCWGC 3 cut(s) 92, 125, 878
TspDTI ATGAA 4 cut(s) 35, 281, 884, 1009
TspGWI ACGGA 2 cut(s) 481, 534
TspRI CASTG 3 cut(s) 115, 670, 989
Tth111I GACNNNGTC 1 cut(s) 681
XbaI TCTAGA 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 804
XmiI GTMKAC 3 cut(s) 432, 463, 676
XspI CTAG 3 cut(s) 38, 165, 1165
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.