Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

17615059 .. 17615511

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGATCCGGATCGTTGCAGCGGTCGGCGTTAGGCTTGGTGGCTGTGAGAGTGGGGATTAGTGGTTGTCAATTCGCTACTTCGGCGGTTGAGGATGATGAGATCAAAGGCGAATCCAGTCCTTTTTCTATGGCGGAGGTCGTTGAAGGCGGGCTGAGATTAGGTTTTGACGATGGTGGTAGAGTCCGTCTTGTTGGTGGTGGAGGGTGGGATCCAAGAGGGTCGAATCTCTCGCCTCTCTTCCATGGTCGTCTCAAAAGGCCGACTTATCTCAGCGAGGATGGTGGCTTTTCGAGTGTGCTGTCGTCGATCAGAGTGGGTTTTCTCCGGCTAGATCACTTGACGATGCTACTACCAGAATGTGGGTTCGCGGCTTGTGATGTCGACTTCTTCTTGACAGTTGACGGAGTGGTACAGACAGTGTTGCAGGCGACCGACCATCGGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.86

Weight (kDa)

5.07

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	5 cut(s)	22, 86, 134, 150, 371
AclWI	GGATC	4 cut(s)	13, 19, 206, 219
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	362, 441
AgsI	TTSAA	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	4 cut(s)	13, 19, 206, 219
Aor13HI	TCCGGA	1 cut(s)	8
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	19
BamHI	GGATCC	2 cut(s)	5, 211
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	167, 275, 447
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	20, 372
BlsI	GCNGC	2 cut(s)	21, 373
BmiI	GGNNCC	2 cut(s)	7, 213
BmsI	GCATC	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 441
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	10
BseAI	TCCGGA	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	100, 286
BseJI	GATNNNNATC	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	362, 441
BseMII	CTCAG	2 cut(s)	146, 286
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	2 cut(s)	26, 435
BshFI	GGCC	1 cut(s)	262
BsiEI	CGRYCG	2 cut(s)	26, 435
BsiSI	CCGG	2 cut(s)	9, 328
BslI	CCNNNNNNNGG	2 cut(s)	362, 441
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	5 cut(s)	22, 86, 134, 150, 371
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	147, 285
BspEI	TCCGGA	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	7, 213
BspPI	GGATC	4 cut(s)	13, 19, 206, 219
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	400, 421
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	152, 429
BstDEI	CTNAG	2 cut(s)	155, 272
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	100, 286
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	6 cut(s)	8, 14, 105, 214, 312, 337
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
BstMCI	CGRYCG	2 cut(s)	26, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	5, 211
BstYI	RGATCY	2 cut(s)	5, 211
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	100, 286
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	152, 429
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	7 cut(s)	36, 44, 154, 262, 288, 331, 374
CviKI_1	RGCY	7 cut(s)	36, 44, 154, 262, 288, 331, 374
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	155, 272
DpnI	GATC	6 cut(s)	7, 13, 104, 213, 311, 336
DpnII	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	131, 246
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	20, 372
FokI	GGATG	2 cut(s)	107, 293
Fsp4HI	GCNGC	2 cut(s)	20, 372
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	20, 372
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	2 cut(s)	9, 328
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	385, 403
HindII	GTYRAC	2 cut(s)	385, 403
HinfI	GANTC	3 cut(s)	113, 183, 226
HpaII	CCGG	2 cut(s)	9, 328
Hpy166II	GTNNAC	2 cut(s)	385, 403
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	9, 394
Hpy8I	GTNNAC	2 cut(s)	385, 403
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	400, 421
HpyCH4V	TGCA	2 cut(s)	19, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	155, 272
Hsp92II	CATG	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	8
Kzo9I	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
LpnPI	CCDG	5 cut(s)	22, 130, 341, 369, 413
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	332
MalI	GATC	6 cut(s)	7, 13, 104, 213, 311, 336
MboI	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
MboII	GAAGA	2 cut(s)	232, 382
MflI	RGATCY	2 cut(s)	5, 211
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	85, 130, 197, 212, 246, 271
MroI	TCCGGA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	2 cut(s)	9, 328
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	7, 213
PfeI	GAWTC	2 cut(s)	113, 226
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	21, 373
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	7, 213
PsuI	RGATCY	2 cut(s)	5, 211
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	383
SatI	GCNGC	2 cut(s)	20, 372
Sau3AI	GATC	6 cut(s)	5, 11, 102, 211, 309, 334
SchI	GAGTC	1 cut(s)	192
SetI	ASST	2 cut(s)	141, 166
SfaNI	GCATC	1 cut(s)	336
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	5 cut(s)	22, 86, 134, 150, 371
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	400, 421
TaqI	TCGA	4 cut(s)	224, 293, 308, 384
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	2 cut(s)	113, 226
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	176, 420
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.