Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

16920 .. 17886

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgcagaccgccgcctttactctctcgccttctctccctctcctcaagtctcgcctcctctccgcccaaacctccaccctcagattcgctcccatacgtgtctccgccttgctcaagcctaacaccgctctcacggtctcacctcctccaccaatgacgccctctccacctttctttcccgcttatcctgttccatctcatcctccgatgacttcaagccctggacttctcctgccctctatcggagccatttctccggccctgggtataaaaatggccttaagggcagcgacgatggtggaggaagtcagtggttttctggacaaggaggaagcagaggtggttgaaggtgaaaaacggcgagtctttcgaagaggcatgacggaaatatgccgaaaattctccttcaggttgcagcagcaggaggtagagggtaggtgggactgcggcgggtttggtggtggtggtgggttcgtgatgggattcataaccggcggtagggccgaattgctttctgggttgagggaatcgacggttgaagataatggaatagtggtgtcggcattggagtttggatgcggtggaggaggcgatataagagagcgtggtggccggaatctctggcttgacgaaggaggattgaaaagttgtttgatgccactgtcgatggcctccactaccagatggtgcagagtgcaagctatggtggccattgtaaatgatgaggaggaggatgaagagagagcgatgaaggagaagaggacaagagtggagaatgaggagttaaggacgattgatgcgaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

269

Amino Acids

29.2

Weight (kDa)

6.07

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AcoI	YGGCCR	2 cut(s)	610, 708
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	242, 263, 498
AflII	CTTAAG	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	4 cut(s)	216, 347, 539, 643
AjnI	CCWGG	2 cut(s)	220, 261
AluBI	AGCT	1 cut(s)	701
AluI	AGCT	1 cut(s)	701
Alw26I	GTCTC	3 cut(s)	54, 106, 142
AoxI	GGCC	6 cut(s)	258, 276, 501, 610, 669, 708
ApeKI	GCWGC	3 cut(s)	287, 415, 418
ApoI	RAATTY	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	259, 501
AsuHPI	GGTGA	2 cut(s)	132, 362
AsuII	TTCGAA	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	299, 427, 430
BccI	CCATC	5 cut(s)	202, 289, 472, 661, 678
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	2 cut(s)	222, 263
BcoDI	GTCTC	3 cut(s)	54, 106, 142
BfrI	CTTAAG	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	12, 288, 416, 419, 448
BlsI	GCNGC	5 cut(s)	13, 289, 417, 420, 449
Bme1390I	CCNGG	2 cut(s)	222, 263
BmgT120I	GGNCC	2 cut(s)	259, 501
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	222, 263
BmsI	GCATC	3 cut(s)	566, 645, 787
Bpu14I	TTCGAA	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	29, 98
BsaAI	YACGTR	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	220, 261, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 263, 498
Bse118I	RCCGGY	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	222, 263
BseDI	CCNNGG	3 cut(s)	220, 261, 262
BseGI	GGATG	3 cut(s)	199, 581, 739
BseLI	CCNNNNNNNGG	3 cut(s)	242, 263, 498
BseMII	CTCAG	1 cut(s)	94
BseRI	GAGGAG	7 cut(s)	32, 47, 135, 600, 740, 743, 794
BseXI	GCAGC	3 cut(s)	299, 427, 430
BsgI	GTGCAG	1 cut(s)	709
BshFI	GGCC	6 cut(s)	260, 278, 503, 612, 671, 710
BsiSI	CCGG	3 cut(s)	257, 492, 613
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	242, 263, 498
BsmAI	GTCTC	3 cut(s)	54, 106, 142
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	6 cut(s)	260, 278, 503, 612, 671, 710
Bso31I	GGTCTC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	370
BspANI	GGCC	6 cut(s)	260, 278, 503, 612, 671, 710
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	220, 261, 262
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	222, 263
Bst4CI	ACNGT	3 cut(s)	136, 535, 663
Bst6I	CTCTTC	3 cut(s)	367, 732, 752
BstACI	GRCGYC	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	199, 581, 739
BstMAI	GTCTC	3 cut(s)	54, 106, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 707
BstNI	CCWGG	2 cut(s)	222, 263
BstSCI	CCNGG	2 cut(s)	220, 261
BstV1I	GCAGC	3 cut(s)	299, 427, 430
BsuRI	GGCC	6 cut(s)	260, 278, 503, 612, 671, 710
BtgZI	GCGATG	1 cut(s)	761
BtsCI	GGATG	3 cut(s)	199, 581, 739
BtsIMutI	CAGTG	2 cut(s)	316, 659
Cac8I	GCNNGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	259, 501
CseI	GACGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	80
EaeI	YGGCCR	2 cut(s)	610, 708
Eam1104I	CTCTTC	3 cut(s)	367, 732, 752
EarI	CTCTTC	3 cut(s)	367, 732, 752
EciI	GGCGGA	2 cut(s)	52, 94
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	220, 261
FaeI	CATG	1 cut(s)	382
FaiI	YATR	7 cut(s)	95, 269, 380, 391, 488, 596, 704
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	1 cut(s)	378
FauI	CCCGC	2 cut(s)	187, 443
Fnu4HI	GCNGC	5 cut(s)	12, 288, 416, 419, 448
FokI	GGATG	3 cut(s)	186, 588, 746
Fsp4HI	GCNGC	5 cut(s)	12, 288, 416, 419, 448
GluI	GCNGC	5 cut(s)	12, 288, 416, 419, 448
HaeIII	GGCC	6 cut(s)	260, 278, 503, 612, 671, 710
HapII	CCGG	3 cut(s)	257, 492, 613
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	382
HinfI	GANTC	5 cut(s)	84, 363, 483, 527, 616
HpaII	CCGG	3 cut(s)	257, 492, 613
HphI	GGTGA	2 cut(s)	132, 362
Hpy188I	TCNGA	3 cut(s)	83, 207, 245
Hpy188III	TCNNGA	2 cut(s)	320, 475
Hpy99I	CGWCG	2 cut(s)	295, 535
HpyAV	CCTTC	5 cut(s)	39, 341, 415, 626, 745
HpyCH4III	ACNGT	3 cut(s)	136, 535, 663
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	4, 415, 690, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 707
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	94, 245
Lsp1109I	GCAGC	3 cut(s)	299, 427, 430
LweI	GCATC	3 cut(s)	566, 645, 787
MaeII	ACGT	1 cut(s)	97
MbiI	CCGCTC	1 cut(s)	128
MboII	GAAGA	4 cut(s)	384, 551, 749, 769
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	2 cut(s)	398, 506
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	372
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	2 cut(s)	281, 785
Msp20I	TGGCCA	1 cut(s)	710
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	3 cut(s)	257, 492, 613
MspR9I	CCNGG	2 cut(s)	222, 263
MvaI	CCWGG	2 cut(s)	222, 263
MwoI	GCNNNNNNNGC	2 cut(s)	284, 707
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	370
PasI	CCCWGGG	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PfeI	GAWTC	4 cut(s)	84, 483, 527, 616
PkrI	GCNGC	5 cut(s)	13, 289, 417, 420, 449
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	220, 261
PspGI	CCWGG	2 cut(s)	220, 261
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	259, 501
SaqAI	TTAA	2 cut(s)	281, 785
SatI	GCNGC	5 cut(s)	12, 288, 416, 419, 448
Sau96I	GGNCC	2 cut(s)	259, 501
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	222, 263
SfaNI	GCATC	3 cut(s)	566, 645, 787
SfuI	TTCGAA	1 cut(s)	370
SmlI	CTYRAG	3 cut(s)	44, 113, 280
SmoI	CTYRAG	3 cut(s)	44, 113, 280
Sse9I	AATT	2 cut(s)	398, 506
StyD4I	CCNGG	2 cut(s)	220, 261
TaaI	ACNGT	3 cut(s)	136, 535, 663
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	370, 530, 665
TasI	AATT	2 cut(s)	398, 506
TauI	GCSGC	2 cut(s)	14, 450
TfiI	GAWTC	4 cut(s)	84, 483, 527, 616
Tru1I	TTAA	2 cut(s)	281, 785
Tru9I	TTAA	2 cut(s)	281, 785
TscAI	CASTG	2 cut(s)	316, 666
TseI	GCWGC	3 cut(s)	287, 415, 418
TspDTI	ATGAA	3 cut(s)	475, 750, 764
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	316, 666
Vha464I	CTTAAG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.