Rh6CG503400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001695
Physical Location & Seq
Reverse (-)
66580589 .. 66582118
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG503400.1

Sequence Viewer

Length: 780 bp
ATGCTACTACCGAATTGTGGGTTCGCGGCTTATGATGTCGACTTTTTCTTCACAATTGATGACCTTCGTCGACGGAGTGGTACAGACAATGTTGCAGGCGACAGGCCACCGGGTAGTTTGGTGGACGGATGCCTTGCGGCTGTTTCTCCGCTCCTTGTTTTCGCTGTTGATCTGGTGGTGGTTGATCGGATTATGGCGCCAATTTGGGTGTCGTTTGGTAACGAGTTGGTGTTAGACCGATTAGGTTTTGCTGGTGTATTGGTGCAATGCACTGAGGGTTGTCGACTGTGTCTGCATTTGTTCAAGGATGAGGGTGGCCAGGTTGGTATGGGTTTTTCTGTCAACGGTGGGCGAGTTGATTATGGCGGCGGTAACTTTTCTCTTGTGGAGGAGGAGCCGATCTTCTGGGCTCGAGTTCTTGAGGTCGTGCCTGGCTTGTTAACTGTTGATGGCAAGAGAGGATTGGGTGTTGCGGATGGGAAGGCTGCAGATGCTTGCGTTCGTAGATTTGGCGGCTGGTCTTCAGGTGGCAATGCTGGCTGTGCTGGATCTCTGGTTGATGATCTTCTTCCCGAGCAAGACTGGTTGCAGTGGCTGGGAGTGTCCAACTGGGCCTGCTGGGCTTTCATGGTGGATGTGGGCCTCAGTACCTGGATTGGGTTTTGGGCCCAAAAGGCAATTAGAAGCAAGAATAGGTCTAAGCGTGCTAAAGACGAGCTACATACAGATGGTGGAACTGTTGGGGATGCTGGTGCATCATCCTCAACTAGTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

27.6

Weight (kDa)

4.72

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 151
AccI GTMKAC 3 cut(s) 39, 70, 283
AccII CGCG 1 cut(s) 26
AciI CCGC 7 cut(s) 26, 137, 149, 366, 369, 473, 513
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 2 cut(s) 82, 649
AfiI CCNNNNNNNGG 2 cut(s) 17, 657
AgsI TTSAA 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 3 cut(s) 318, 430, 650
AluBI AGCT 1 cut(s) 718
AluI AGCT 1 cut(s) 718
AlwI GGATC 1 cut(s) 556
AlwNI CAGNNNCTG 2 cut(s) 595, 651
Ama87I CYCGRG 2 cut(s) 411, 572
AoxI GGCC 5 cut(s) 104, 316, 612, 640, 666
ApaI GGGCCC 1 cut(s) 670
ApeKI GCWGC 1 cut(s) 485
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 4 cut(s) 612, 640, 666, 667
AsuC2I CCSGG 1 cut(s) 111
AvaI CYCGRG 2 cut(s) 411, 572
BaeGI GKGCMC 1 cut(s) 670
BalI TGGCCA 1 cut(s) 318
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 2 cut(s) 412, 670
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 443, 470, 722
BciT130I CCWGG 3 cut(s) 320, 432, 652
BcnI CCSGG 1 cut(s) 111
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 200
BglI GCCNNNNNGGC 2 cut(s) 620, 674
BisI GCNGC 5 cut(s) 27, 138, 367, 486, 514
BlsI GCNGC 5 cut(s) 28, 139, 368, 487, 515
Bme1390I CCNGG 4 cut(s) 111, 320, 432, 652
BmeT110I CYCGRG 2 cut(s) 411, 572
BmgT120I GGNCC 4 cut(s) 612, 640, 666, 667
BmiI GGNNCC 3 cut(s) 198, 396, 668
BmrFI CCNGG 4 cut(s) 111, 320, 432, 652
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 4 cut(s) 119, 481, 736, 764
BmuI ACTGGG 1 cut(s) 619
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 657
Bse1I ACTGG 2 cut(s) 587, 614
Bse3DI GCAATG 2 cut(s) 272, 538
BseBI CCWGG 3 cut(s) 320, 432, 652
BseGI GGATG 6 cut(s) 134, 313, 481, 640, 751, 758
BseLI CCNNNNNNNGG 2 cut(s) 17, 657
BseMI GCAATG 2 cut(s) 272, 538
BseMII CTCAG 2 cut(s) 264, 658
BseNI ACTGG 2 cut(s) 587, 614
BseRI GAGGAG 2 cut(s) 404, 407
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 1 cut(s) 472
BseYI CCCAGC 2 cut(s) 595, 618
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 5 cut(s) 106, 318, 614, 642, 668
BshNI GGYRCC 1 cut(s) 196
BsiHKCI CYCGRG 2 cut(s) 411, 572
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 17, 657
BsnI GGCC 5 cut(s) 106, 318, 614, 642, 668
BsoBI CYCGRG 2 cut(s) 411, 572
Bsp120I GGGCCC 1 cut(s) 666
Bsp1286I GDGCHC 2 cut(s) 412, 670
Bsp143I GATC 5 cut(s) 169, 184, 399, 548, 562
BspACI CCGC 7 cut(s) 26, 137, 149, 366, 369, 473, 513
BspANI GGCC 5 cut(s) 106, 318, 614, 642, 668
BspCNI CTCAG 2 cut(s) 265, 657
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 198, 396, 668
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 272, 538
BsrI ACTGG 2 cut(s) 587, 614
BssMI GATC 5 cut(s) 169, 184, 399, 548, 562
BssNI GRCGYC 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 320, 432, 652
Bst4CI ACNGT 4 cut(s) 288, 347, 445, 739
BstACI GRCGYC 1 cut(s) 197
BstC8I GCNNGC 5 cut(s) 97, 496, 538, 616, 705
BstDEI CTNAG 3 cut(s) 273, 644, 699
BstF5I GGATG 6 cut(s) 134, 313, 481, 640, 751, 758
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 5 cut(s) 172, 187, 402, 551, 565
BstMBI GATC 5 cut(s) 169, 184, 399, 548, 562
BstMWI GCNNNNNNNGC 5 cut(s) 491, 537, 542, 620, 674
BstNI CCWGG 3 cut(s) 320, 432, 652
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 4 cut(s) 109, 318, 430, 650
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 5 cut(s) 106, 318, 614, 642, 668
BtsCI GGATG 6 cut(s) 134, 313, 481, 640, 751, 758
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 270, 596
Cac8I GCNNGC 5 cut(s) 97, 496, 538, 616, 705
CaiI CAGNNNCTG 2 cut(s) 595, 651
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 4 cut(s) 612, 640, 666, 667
Csp6I GTAC 2 cut(s) 81, 648
CviAII CATG 1 cut(s) 628
CviQI GTAC 2 cut(s) 81, 648
DdeI CTNAG 3 cut(s) 273, 644, 699
DinI GGCGCC 1 cut(s) 198
DpnI GATC 5 cut(s) 171, 186, 401, 550, 564
DpnII GATC 5 cut(s) 169, 184, 399, 548, 562
EaeI YGGCCR 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 412, 670
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 2 cut(s) 411, 572
EcoRII CCWGG 3 cut(s) 318, 430, 650
EcoT38I GRGCYC 2 cut(s) 412, 670
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
FaeI CATG 1 cut(s) 631
FaiI YATR 6 cut(s) 33, 194, 329, 363, 629, 723
FatI CATG 1 cut(s) 627
FblI GTMKAC 3 cut(s) 39, 70, 283
Fnu4HI GCNGC 5 cut(s) 27, 138, 367, 486, 514
FokI GGATG 6 cut(s) 141, 320, 488, 647, 745, 758
FriOI GRGCYC 2 cut(s) 412, 670
Fsp4HI GCNGC 5 cut(s) 27, 138, 367, 486, 514
FspBI CTAG 1 cut(s) 768
GlaI GCGC 1 cut(s) 198
GluI GCNGC 5 cut(s) 27, 138, 367, 486, 514
GsaI CCCAGC 2 cut(s) 599, 622
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 5 cut(s) 106, 318, 614, 642, 668
HapII CCGG 1 cut(s) 110
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 631
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 5 cut(s) 40, 71, 284, 343, 441
HindII GTYRAC 5 cut(s) 40, 71, 284, 343, 441
HpaI GTTAAC 1 cut(s) 441
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 6 cut(s) 40, 71, 124, 284, 343, 441
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 419, 572
Hpy8I GTNNAC 6 cut(s) 40, 71, 124, 284, 343, 441
Hpy99I CGWCG 2 cut(s) 72, 75
HpyAV CCTTC 2 cut(s) 74, 475
HpyCH4III ACNGT 4 cut(s) 288, 347, 445, 739
HpyCH4V TGCA 7 cut(s) 95, 265, 270, 295, 488, 589, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 491, 537, 542, 620, 674
HpyF3I CTNAG 3 cut(s) 273, 644, 699
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 631
HspAI GCGC 1 cut(s) 197
KasI GGCGCC 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 441
Kzo9I GATC 5 cut(s) 169, 184, 399, 548, 562
LmnI GCTCC 2 cut(s) 156, 394
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 4 cut(s) 119, 481, 736, 764
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 2 cut(s) 218, 371
MalI GATC 5 cut(s) 171, 186, 401, 550, 564
MbiI CCGCTC 1 cut(s) 151
MboI GATC 5 cut(s) 169, 184, 399, 548, 562
MboII GAAGA 5 cut(s) 40, 394, 513, 557, 560
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 412, 670
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 4 cut(s) 13, 54, 201, 678
MluNI TGGCCA 1 cut(s) 318
Mly113I GGCGCC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 8 cut(s) 268, 304, 382, 385, 415, 452, 653, 772
Mox20I TGGCCA 1 cut(s) 318
MscI TGGCCA 1 cut(s) 318
MseI TTAA 2 cut(s) 440, 778
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 318
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 4 cut(s) 111, 320, 432, 652
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 3 cut(s) 320, 432, 652
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 491, 537, 542, 620, 674
NarI GGCGCC 1 cut(s) 197
NciI CCSGG 1 cut(s) 111
NdeII GATC 5 cut(s) 169, 184, 399, 548, 562
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 3 cut(s) 198, 396, 668
PaeR7I CTCGAG 1 cut(s) 411
PflFI GACNNNGTC 1 cut(s) 288
PkrI GCNGC 5 cut(s) 28, 139, 368, 487, 515
PluTI GGCGCC 1 cut(s) 200
PshAI GACNNNNGTC 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 318, 430, 650
PspFI CCCAGC 2 cut(s) 595, 618
PspGI CCWGG 3 cut(s) 318, 430, 650
PspN4I GGNNCC 3 cut(s) 198, 396, 668
PspOMI GGGCCC 1 cut(s) 666
PspPI GGNCC 4 cut(s) 612, 640, 666, 667
PspXI VCTCGAGB 1 cut(s) 411
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 2 cut(s) 595, 651
PsuI RGATCY 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 288
RsaI GTAC 2 cut(s) 82, 649
RsaNI GTAC 2 cut(s) 81, 648
RseI CAYNNNNRTG 1 cut(s) 726
SalI GTCGAC 3 cut(s) 38, 69, 282
SaqAI TTAA 2 cut(s) 440, 778
SatI GCNGC 5 cut(s) 27, 138, 367, 486, 514
Sau3AI GATC 5 cut(s) 169, 184, 399, 548, 562
Sau96I GGNCC 4 cut(s) 612, 640, 666, 667
ScrFI CCNGG 4 cut(s) 111, 320, 432, 652
SduI GDGCHC 2 cut(s) 412, 670
SetI ASST 8 cut(s) 66, 247, 324, 426, 529, 653, 698, 720
SfaNI GCATC 4 cut(s) 119, 481, 736, 764
SfcI CTRYAG 1 cut(s) 486
SfoI GGCGCC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 411
SgrDI CGTCGACG 1 cut(s) 69
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 411, 419
SmoI CTYRAG 2 cut(s) 411, 419
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 4 cut(s) 13, 54, 201, 678
SsiI CCGC 7 cut(s) 26, 137, 149, 366, 369, 473, 513
SspDI GGCGCC 1 cut(s) 196
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 4 cut(s) 109, 318, 430, 650
TaaI ACNGT 4 cut(s) 288, 347, 445, 739
TaqI TCGA 4 cut(s) 39, 70, 283, 412
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 13, 54, 201, 678
TauI GCSGC 4 cut(s) 29, 140, 369, 516
Tru1I TTAA 2 cut(s) 440, 778
Tru9I TTAA 2 cut(s) 440, 778
TscAI CASTG 2 cut(s) 277, 596
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 1 cut(s) 616
TspGWI ACGGA 2 cut(s) 88, 141
TspRI CASTG 2 cut(s) 277, 596
Tth111I GACNNNGTC 1 cut(s) 288
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 3 cut(s) 39, 70, 283
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.