Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

24103399 .. 24104984

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCAGACATGGCTTCTCGAGGGCCCTCCTCTCACCGCCTCTCCGCCCAAACCTCCACCCTCGGATTCGCTCCCACACGTGTCTCCCGACTCGCTCAAGCTCCCGACGCCTCTCTCTCACCTCCTCTATCAATGACGCCCTCTCCACTCTCTCTCTCCGCCGATCCTCGGTTCGTCTCCTCCTCCGATGACTTCAAGCCCCGGACTTCTCCCGCCCCTCGATCGGAGCCCTTTCTCCCGCCCCCGGGTATAAAAATGGCCTTCATTGCAGCGACGACGGTGGGAGGAAGTCGGTGGTTTTCGGACAAGGAGGAAGCGAGAGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.44

Weight (kDa)

10.21

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	37, 45, 159, 213, 239
AclWI	GGATC	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	108, 137
AfiI	CCNNNNNNNGG	4 cut(s)	168, 223, 244, 245
AflIII	ACRYGT	2 cut(s)	77, 79
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	88, 181
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	18, 244
AoxI	GGCC	2 cut(s)	23, 258
ApaI	GGGCCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	23, 24
AsuC2I	CCSGG	3 cut(s)	202, 245, 246
AsuHPI	GGTGA	2 cut(s)	26, 111
AvaI	CYCGRG	2 cut(s)	18, 244
BaeGI	GKGCMC	1 cut(s)	27
BanII	GRGCYC	2 cut(s)	27, 231
BbrPI	CACGTG	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	281
BcnI	CCSGG	3 cut(s)	202, 245, 246
BcoDI	GTCTC	2 cut(s)	88, 181
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	202, 245, 246
BmeT110I	CYCGRG	2 cut(s)	18, 244
BmgT120I	GGNCC	2 cut(s)	23, 24
BmiI	GGNNCC	2 cut(s)	25, 228
BmrFI	CCNGG	3 cut(s)	202, 245, 246
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	3 cut(s)	202, 245, 246
BsaAI	YACGTR	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	108, 137
BsaJI	CCNNGG	5 cut(s)	61, 167, 200, 243, 244
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 127, 157
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 223, 244, 245
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	5 cut(s)	61, 167, 200, 243, 244
BseLI	CCNNNNNNNGG	4 cut(s)	168, 223, 244, 245
BseMI	GCAATG	1 cut(s)	264
BseRI	GAGGAG	4 cut(s)	19, 114, 169, 172
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	25, 260
BsiEI	CGRYCG	1 cut(s)	224
BsiHKCI	CYCGRG	2 cut(s)	18, 244
BsiSI	CCGG	2 cut(s)	202, 245
BslI	CCNNNNNNNGG	4 cut(s)	168, 223, 244, 245
BsmAI	GTCTC	2 cut(s)	88, 181
BsmBI	CGTCTC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	25, 260
BsoBI	CYCGRG	2 cut(s)	18, 244
Bsp120I	GGGCCC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	27, 231
Bsp143I	GATC	2 cut(s)	163, 221
BspACI	CCGC	5 cut(s)	37, 45, 159, 213, 239
BspANI	GGCC	2 cut(s)	25, 260
BspLI	GGNNCC	2 cut(s)	25, 228
BspPI	GGATC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	5 cut(s)	61, 167, 200, 243, 244
BssMI	GATC	2 cut(s)	163, 221
BssNI	GRCGYC	2 cut(s)	108, 137
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	2 cut(s)	108, 137
BstBAI	YACGTR	1 cut(s)	80
BstKTI	GATC	2 cut(s)	166, 224
BstMAI	GTCTC	2 cut(s)	88, 181
BstMBI	GATC	2 cut(s)	163, 221
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 107, 266
BstSCI	CCNGG	3 cut(s)	200, 243, 244
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	25, 260
Cfr13I	GGNCC	2 cut(s)	23, 24
Cfr9I	CCCGGG	1 cut(s)	244
CseI	GACGC	2 cut(s)	116, 145
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	6 cut(s)	14, 25, 101, 199, 229, 260
CviKI_1	RGCY	6 cut(s)	14, 25, 101, 199, 229, 260
DpnI	GATC	2 cut(s)	165, 223
DpnII	GATC	2 cut(s)	163, 221
EciI	GGCGGA	2 cut(s)	34, 148
Eco24I	GRGCYC	2 cut(s)	27, 231
Eco72I	CACGTG	1 cut(s)	80
Eco88I	CYCGRG	2 cut(s)	18, 244
EcoO109I	RGGNCCY	2 cut(s)	23, 24
EcoT38I	GRGCYC	2 cut(s)	27, 231
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	13
FaiI	YATR	2 cut(s)	11, 251
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	220, 246
Fnu4HI	GCNGC	1 cut(s)	270
FriOI	GRGCYC	2 cut(s)	27, 231
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	25, 260
HapII	CCGG	2 cut(s)	202, 245
HgaI	GACGC	2 cut(s)	116, 145
Hin1I	GRCGYC	2 cut(s)	108, 137
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	2 cut(s)	66, 90
HpaII	CCGG	2 cut(s)	202, 245
HphI	GGTGA	2 cut(s)	26, 111
Hpy188I	TCNGA	4 cut(s)	65, 187, 226, 304
Hpy188III	TCNNGA	3 cut(s)	18, 87, 104
Hpy99I	CGWCG	3 cut(s)	110, 277, 280
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 107, 266
HpySE526I	ACGT	1 cut(s)	79
Hsp92I	GRCGYC	2 cut(s)	108, 137
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	163, 221
LmnI	GCTCC	3 cut(s)	76, 106, 226
LpnPI	CCDG	2 cut(s)	215, 258
Lsp1109I	GCAGC	1 cut(s)	281
MaeII	ACGT	1 cut(s)	79
MalI	GATC	2 cut(s)	165, 223
MboI	GATC	2 cut(s)	163, 221
MhlI	GDGCHC	2 cut(s)	27, 231
MlyI	GAGTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	328
MspI	CCGG	2 cut(s)	202, 245
MspR9I	CCNGG	3 cut(s)	202, 245, 246
MwoI	GCNNNNNNNGC	3 cut(s)	11, 107, 266
NciI	CCSGG	3 cut(s)	202, 245, 246
NdeII	GATC	2 cut(s)	163, 221
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	25, 228
PaeR7I	CTCGAG	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	224
PleI	GAGTC	1 cut(s)	84
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	25, 228
PspOMI	GGGCCC	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	23, 24
PvuI	CGATCG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	163, 221
Sau96I	GGNCC	2 cut(s)	23, 24
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	202, 245, 246
SduI	GDGCHC	2 cut(s)	27, 231
SetI	ASST	5 cut(s)	56, 82, 103, 124, 325
Sfr274I	CTCGAG	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	18
SmaI	CCCGGG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	18, 96
SmoI	CTYRAG	2 cut(s)	18, 96
SsiI	CCGC	5 cut(s)	37, 45, 159, 213, 239
StyD4I	CCNGG	3 cut(s)	200, 243, 244
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	19, 220
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	253
TspMI	CCCGGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	18
XmaI	CCCGGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.