Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

50116792 .. 50117429

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTCATAGAGTTTGGTACATACATAACTCTTTGGGTTGTACCGGAGCCCCGTCGCGCTTCTTCTCCTCTAACAATCCAAACACTGCGTCATCACCACCCCGACGACCTCCCGGCGTCATCACCACCACCTTCCTTGACCTCAAGTTCGGCCTCTTCCACTTCAAAATTTTGGTCAAGCGCGGCGGAGTTCTTGGGGCTGAGCGTGTACTATTTCAACACAAGGGTGGAGGAGTTAGAGTTTGGATGCAGTGAAGGAGGCGATATAAGTGGGCGTGGTGGCCGGAATCTTGGGCTTGACGGAGGAGGATTGAAAAGCTGTTTGATGCCGCCGTCGATGACCTCCGCTACCAGATGGTGCAGAGTGCGGGCTATGGTGGCCATTGTAGATGATGAGGATTTGGATGAAGAGAGTGCGATGAAGGAGAAGAGGAAGAAGAGGACGGCTAATGAGAAGTTGCGAACCATTAAGGGCACATTAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.72

Weight (kDa)

6.83

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	57, 182
AciI	CCGC	5 cut(s)	182, 185, 329, 345, 367
AcoI	YGGCCR	2 cut(s)	280, 378
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	3 cut(s)	19, 42, 209
AgsI	TTSAA	3 cut(s)	165, 217, 313
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
AoxI	GGCC	3 cut(s)	150, 280, 378
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	6 cut(s)	73, 105, 130, 158, 162, 190
AspLEI	GCGC	2 cut(s)	59, 182
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	86, 114
BaeGI	GKGCMC	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	51
BccI	CCATC	1 cut(s)	348
BceAI	ACGGC	2 cut(s)	316, 459
BcnI	CCSGG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	183, 329
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	184, 330
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	236, 315
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
BseGI	GGATG	2 cut(s)	251, 409
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	3 cut(s)	57, 245, 318
BseSI	GKGCMC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	379
Bsh1236I	CGCG	2 cut(s)	57, 182
BshFI	GGCC	3 cut(s)	152, 282, 380
BsiSI	CCGG	3 cut(s)	44, 113, 283
BsnI	GGCC	3 cut(s)	152, 282, 380
Bsp1286I	GDGCHC	2 cut(s)	51, 476
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	5 cut(s)	182, 185, 329, 345, 367
BspANI	GGCC	3 cut(s)	152, 282, 380
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	2 cut(s)	57, 182
BspLI	GGNNCC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	116
Bst6I	CTCTTC	4 cut(s)	160, 402, 422, 431
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	251, 409
BstFNI	CGCG	2 cut(s)	57, 182
BstHHI	GCGC	2 cut(s)	59, 182
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	2 cut(s)	57, 182
BsuRI	GGCC	3 cut(s)	152, 282, 380
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	251, 409
BtsI	GCAGTG	2 cut(s)	83, 256
BtsIMutI	CAGTG	2 cut(s)	83, 256
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	2 cut(s)	59, 182
CseI	GACGC	2 cut(s)	77, 105
Csp6I	GTAC	3 cut(s)	18, 41, 208
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviJI	RGCY	9 cut(s)	49, 152, 199, 282, 295, 318, 371, 380, 446
CviKI_1	RGCY	9 cut(s)	49, 152, 199, 282, 295, 318, 371, 380, 446
CviQI	GTAC	3 cut(s)	18, 41, 208
DdeI	CTNAG	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	280, 378
Eam1104I	CTCTTC	4 cut(s)	160, 402, 422, 431
EarI	CTCTTC	4 cut(s)	160, 402, 422, 431
EciI	GGCGGA	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	51
FaiI	YATR	5 cut(s)	8, 22, 26, 266, 374
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	183, 329
FokI	GGATG	2 cut(s)	258, 416
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	183, 329
GlaI	GCGC	2 cut(s)	58, 181
GluI	GCNGC	2 cut(s)	183, 329
HaeIII	GGCC	3 cut(s)	152, 282, 380
HapII	CCGG	3 cut(s)	44, 113, 283
HgaI	GACGC	2 cut(s)	77, 105
HhaI	GCGC	2 cut(s)	59, 182
Hin1I	GRCGYC	1 cut(s)	116
Hin6I	GCGC	2 cut(s)	57, 180
HinP1I	GCGC	2 cut(s)	57, 180
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	3 cut(s)	44, 113, 283
HphI	GGTGA	2 cut(s)	86, 114
Hpy166II	GTNNAC	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	57, 107, 337
HpyAV	CCTTC	3 cut(s)	141, 248, 415
HpyCH4V	TGCA	2 cut(s)	249, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	116
HspAI	GCGC	2 cut(s)	57, 180
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	57, 126, 296, 364
LweI	GCATC	2 cut(s)	236, 315
MboII	GAAGA	6 cut(s)	54, 147, 419, 439, 445, 448
MhlI	GDGCHC	2 cut(s)	51, 476
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	2 cut(s)	468, 487
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	3 cut(s)	44, 113, 283
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	57, 182
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	184, 330
PspN4I	GGNNCC	1 cut(s)	48
RsaI	GTAC	3 cut(s)	19, 42, 209
RsaNI	GTAC	3 cut(s)	18, 41, 208
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	468, 487
SatI	GCNGC	2 cut(s)	183, 329
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	51, 476
SetI	ASST	5 cut(s)	111, 133, 143, 320, 344
SfaNI	GCATC	2 cut(s)	236, 315
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	5 cut(s)	182, 185, 329, 345, 367
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	2 cut(s)	185, 331
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	468, 487
Tru9I	TTAA	2 cut(s)	468, 487
TscAI	CASTG	2 cut(s)	90, 256
TspDTI	ATGAA	2 cut(s)	420, 434
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	90, 256
XapI	RAATTY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.