Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

61719150 .. 61720139

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACGGCGGCCGCTTTAGCAAGGTTGGAGTCACTGGCGAGGAAAGAGCTTGTTAGGACGTCAATTGTTGATGGCGGAGGTTGGGAAGGGTGGGATCTGGGAGGGTCAGATCTCTTGCCTTTCTTCCATAGTGGTCTCAAAGGGCTGATTCATCTCGGTGATGATGGAGGTATTCAGAGTGAGCTATGGTCGATAAGAGTGGGATTGTTCATTCTCCAACGGGATCACCTGATGTTGCTGCTGCTAGATTGTGGGTTCGCAGCTTGTGCTATTTTCAGAGAAGTTGACGTCGACTTCGACTTCTTCTTTGCCGTTGACGGCCTTCGACGACGGAGCCGTACTGATAATGTTGCAGGCGATAGGCCACAAAGTAGATTGATGGACGAATGGTGCATCGATGGCGAGCATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

4.83

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	62, 291
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	3 cut(s)	8, 12, 75
AclWI	GGATC	2 cut(s)	102, 231
AcoI	YGGCCR	1 cut(s)	9
AcyI	GRCGYC	2 cut(s)	59, 288
AfaI	GTAC	1 cut(s)	340
AluBI	AGCT	3 cut(s)	49, 184, 263
AluI	AGCT	3 cut(s)	49, 184, 263
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	102, 231
AoxI	GGCC	3 cut(s)	9, 319, 362
ApeKI	GCWGC	3 cut(s)	238, 241, 260
ArsI	GACNNNNNNTTYG	4 cut(s)	278, 290, 310, 322
AsuHPI	GGTGA	2 cut(s)	170, 218
BbvI	GCAGC	3 cut(s)	225, 228, 272
BccI	CCATC	4 cut(s)	65, 158, 373, 392
BceAI	ACGGC	4 cut(s)	21, 296, 321, 334
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	5 cut(s)	9, 12, 239, 242, 261
BlsI	GCNGC	5 cut(s)	10, 13, 240, 243, 262
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	396
BsaHI	GRCGYC	2 cut(s)	59, 288
BsaI	GGTCTC	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	225, 228, 272
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	11, 321, 364
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	11, 321, 364
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	94, 109, 223
BspACI	CCGC	3 cut(s)	8, 12, 75
BspANI	GGCC	3 cut(s)	11, 321, 364
BspDI	ATCGAT	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	102, 231
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	3 cut(s)	94, 109, 223
BssNI	GRCGYC	2 cut(s)	59, 288
BstACI	GRCGYC	2 cut(s)	59, 288
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	355, 404
BstKTI	GATC	3 cut(s)	97, 112, 226
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	94, 109, 223
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 266, 399
BstV1I	GCAGC	3 cut(s)	225, 228, 272
BstX2I	RGATCY	2 cut(s)	94, 109
BstYI	RGATCY	2 cut(s)	94, 109
BstZI	CGGCCG	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	11, 321, 364
BsuTUI	ATCGAT	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	355, 404
CciNI	GCGGCCGC	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	339
CviJI	RGCY	8 cut(s)	11, 49, 145, 184, 263, 321, 336, 364
CviKI_1	RGCY	8 cut(s)	11, 49, 145, 184, 263, 321, 336, 364
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	3 cut(s)	96, 111, 225
DpnII	GATC	3 cut(s)	94, 109, 223
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	90
EclXI	CGGCCG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	140
Eco52I	CGGCCG	1 cut(s)	9
FaiI	YATR	2 cut(s)	129, 187
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	5 cut(s)	9, 12, 239, 242, 261
Fsp4HI	GCNGC	5 cut(s)	9, 12, 239, 242, 261
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	5 cut(s)	9, 12, 239, 242, 261
HaeIII	GGCC	3 cut(s)	11, 321, 364
Hin1I	GRCGYC	2 cut(s)	59, 288
HincII	GTYRAC	3 cut(s)	286, 292, 316
HindII	GTYRAC	3 cut(s)	286, 292, 316
HinfI	GANTC	2 cut(s)	29, 148
HphI	GGTGA	2 cut(s)	170, 218
Hpy166II	GTNNAC	3 cut(s)	286, 292, 316
Hpy188I	TCNGA	3 cut(s)	109, 177, 278
Hpy8I	GTNNAC	3 cut(s)	286, 292, 316
Hpy99I	CGWCG	3 cut(s)	293, 330, 333
HpyAV	CCTTC	2 cut(s)	80, 332
HpyCH4IV	ACGT	2 cut(s)	59, 288
HpyCH4V	TGCA	2 cut(s)	353, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 266, 399
HpySE526I	ACGT	2 cut(s)	59, 288
Hsp92I	GRCGYC	2 cut(s)	59, 288
Kzo9I	GATC	3 cut(s)	94, 109, 223
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	4 cut(s)	20, 83, 242, 339
Lsp1109I	GCAGC	3 cut(s)	225, 228, 272
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	59, 288
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	96, 111, 225
MboI	GATC	3 cut(s)	94, 109, 223
MboII	GAAGA	2 cut(s)	115, 295
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	2 cut(s)	94, 109
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	6, 241
MnlI	CCTC	4 cut(s)	33, 71, 95, 161
MseI	TTAA	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	17, 266, 399
NdeII	GATC	3 cut(s)	94, 109, 223
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	30
NotI	GCGGCCGC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 334
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	5 cut(s)	10, 13, 240, 243, 262
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	94, 109
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	5 cut(s)	9, 12, 239, 242, 261
Sau3AI	GATC	3 cut(s)	94, 109, 223
SchI	GAGTC	1 cut(s)	38
SetI	ASST	9 cut(s)	26, 51, 62, 82, 172, 186, 231, 265, 291
SfaNI	GCATC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	3 cut(s)	8, 12, 75
SspMI	CTAG	1 cut(s)	245
TaiI	ACGT	2 cut(s)	62, 291
TaqI	TCGA	5 cut(s)	191, 291, 297, 325, 396
TasI	AATT	1 cut(s)	63
TauI	GCSGC	2 cut(s)	11, 14
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	238, 241, 260
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	140, 199
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	245
ZraI	GACGTC	2 cut(s)	60, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.