Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

68385910 .. 68388914

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGCTCATGGCAGATCTGCGTCTGCTTATTCTTTCCCTCATTTGTCTTAGTGGGGATAAATCTGTCTCGATTTTGTTTGCTGGTGCCGAGTGTGTTGGGTCGGCGATGGTGGTAGATCGTGTTGAGCGGCCGGGTTTAGGGCGCAAGGATCGTGATAGATGCTGGACATTGGCTGCTTCCGGCGTCGTCGTTTGGGAGACAATGGTGCTGACGGAGGTCGTCGGGGTTGGTATGTCGGCAAGACCTGATTTCGGGCATTTGAGGCGGCTTCAAAGAGATGATCAGTGGCAGATCGTGTTGAGCCTCCGTCGATTGTGCTTGCAGGTTTTCGGCGCTGGACATGTGCTGCACTTGAAAGCGATATCAGCAGAGGTTTTGGTTTGGATGACTAGAGATCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

8.9

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	3 cut(s)	130, 268, 403
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	140, 254
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	275, 358
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	73, 194
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	176, 349
AspLEI	GCGC	2 cut(s)	147, 338
AsuC2I	CCSGG	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	163, 336
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	73, 194
BfaI	CTAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	316
BglII	AGATCT	2 cut(s)	16, 397
BisI	GCNGC	4 cut(s)	131, 177, 269, 350
BlsI	GCNGC	4 cut(s)	132, 178, 270, 351
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	152
BoxI	GACNNNNGTC	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 254
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	140, 254
BseX3I	CGGCCG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	163, 336
BsgI	GTGCAG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	134, 183
BslI	CCNNNNNNNGG	2 cut(s)	140, 254
BsmAI	GTCTC	2 cut(s)	73, 194
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
BspACI	CCGC	3 cut(s)	130, 268, 403
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	130
BssMI	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
BssNI	GRCGYC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	147, 338
BstKTI	GATC	6 cut(s)	19, 121, 154, 286, 297, 400
BstMAI	GTCTC	2 cut(s)	73, 194
BstMBI	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 368
BstNSI	RCATGY	1 cut(s)	347
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	163, 336
BstX2I	RGATCY	2 cut(s)	16, 397
BstYI	RGATCY	2 cut(s)	16, 397
BstZI	CGGCCG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	2 cut(s)	147, 338
CseI	GACGC	2 cut(s)	11, 175
CviAII	CATG	2 cut(s)	10, 344
CviJI	RGCY	4 cut(s)	133, 176, 271, 306
CviKI_1	RGCY	4 cut(s)	133, 176, 271, 306
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	6 cut(s)	18, 120, 153, 285, 296, 399
DpnII	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
EaeI	YGGCCR	1 cut(s)	131
EagI	CGGCCG	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	366
FaeI	CATG	2 cut(s)	13, 347
FaiI	YATR	3 cut(s)	11, 236, 345
FatI	CATG	2 cut(s)	9, 343
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	131, 177, 269, 350
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	131, 177, 269, 350
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	146, 337
GluI	GCNGC	4 cut(s)	131, 177, 269, 350
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	134, 183
HgaI	GACGC	2 cut(s)	11, 175
HhaI	GCGC	2 cut(s)	147, 338
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	13, 347
Hin6I	GCGC	2 cut(s)	145, 336
HinP1I	GCGC	2 cut(s)	145, 336
HpaII	CCGG	2 cut(s)	134, 183
Hpy188III	TCNNGA	2 cut(s)	70, 155
Hpy99I	CGWCG	4 cut(s)	191, 194, 227, 315
HpyCH4V	TGCA	2 cut(s)	325, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 368
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	13, 347
HspAI	GCGC	2 cut(s)	145, 336
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
LpnPI	CCDG	7 cut(s)	69, 147, 151, 196, 261, 311, 324
Lsp1109I	GCAGC	2 cut(s)	163, 336
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	393
MalI	GATC	6 cut(s)	18, 120, 153, 285, 296, 399
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
MflI	RGATCY	2 cut(s)	16, 397
MhlI	GDGCHC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	50, 211, 258, 317, 367
MspI	CCGG	2 cut(s)	134, 183
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	265, 368
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
NlaIII	CATG	2 cut(s)	13, 347
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	115
NspI	RCATGY	1 cut(s)	347
PciI	ACATGT	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	132, 178, 270, 351
PscI	ACATGT	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	16, 397
SatI	GCNGC	4 cut(s)	131, 177, 269, 350
Sau3AI	GATC	6 cut(s)	16, 118, 151, 283, 294, 397
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	222, 250, 330, 378
SfaNI	GCATC	1 cut(s)	152
SsiI	CCGC	3 cut(s)	130, 268, 403
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	133
TaqI	TCGA	2 cut(s)	71, 313
TauI	GCSGC	2 cut(s)	133, 271
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	2 cut(s)	176, 349
TspGWI	ACGGA	2 cut(s)	230, 299
TspRI	CASTG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.