Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

14629321 .. 14631969

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTCGAGTTTCTGTACGTGGAGGAGATTTGCTTGCACCAGTGAAAGACTGTGGAGGTTGGACGAATGACCTAGCGCTCTCTACCAGGGTTTGTGGAGCAGCGCCGTTTTTGGGTCTGTCGCTGCCTATACCTTCTCTATTCATAGAGATTTCTTCAGGCTTTGGCCTCTTCTTGTTTACCCTTGCTGTTTCCAATGGCAAAGGGTTAGGCTCGTGTTTTCTATTTAGTGGTTTGTTGCTTGTCAACGATGGCGGTCGTATTAGCGGGGTTGGAGTAGCGTTGTTGGCGAGAGAAGGGCTTGTTAGGACGGCAATTGTTGGTGGTGGAGAGTGGGATCCGGGAGGATCAGATCTCTTGCCTTTCTTCCATGGTCGTCTTAAAGGACCGACTCATCTTTGCGAGGTTGGTGGTATTTTGAGTGAGCTGTCGTCGATCAGAGTGGGTTTTTTAATTCTCCGGCCGGACTTGATGATGCCACTGCCAGATTACGGGTTCACGGCTTGTGCTATTCTCAGAGGACTTGAACACGTGTTTGGTGGATTAGCCAGGAAGATGCTAACAAGCTTCATTCCAGAGCTCAAGGACTTCATGTTCGTGAGCTCGCCGCTTTTGGATCTGGAGGCCAAGAGTTGTGAAACCGTCTACACCGCTCCAGCCAGCGATAAATTCAGAGAAACAAAGCCGTCGAGCAACCTGTGGTTGGAGAACTCCGACGAGATGGAGTCCTCGGCGGTGTCCGTCCGTCAGAGAATTGGATTCAAGTTTTGCTTTGAGTTTTGCATTTTGCTAGGAAATGTCATCATCCCATCTTATTGCAATTTGCAGATGAAGAAGGAAATAGAAATGAAGAAGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

288

Amino Acids

30.97

Weight (kDa)

6.82

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	5 cut(s)	255, 267, 608, 651, 734
AclWI	GGATC	4 cut(s)	332, 345, 355, 624
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	532
AfaI	GTAC	1 cut(s)	18
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	113, 491, 703
AflIII	ACRYGT	2 cut(s)	529, 531
AgsI	TTSAA	2 cut(s)	527, 763
AjnI	CCWGG	2 cut(s)	86, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	4 cut(s)	427, 567, 580, 603
AluI	AGCT	4 cut(s)	427, 567, 580, 603
Alw21I	GWGCWC	2 cut(s)	582, 605
AlwI	GGATC	4 cut(s)	332, 345, 355, 624
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	3 cut(s)	166, 461, 624
ApeKI	GCWGC	2 cut(s)	101, 124
ApoI	RAATTY	1 cut(s)	668
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AspLEI	GCGC	2 cut(s)	79, 106
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	582, 605
BauI	CACGAG	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	582, 605
BbvI	GCAGC	2 cut(s)	111, 113
BccI	CCATC	3 cut(s)	245, 715, 817
BceAI	ACGGC	4 cut(s)	91, 327, 516, 670
BciT130I	CCWGG	2 cut(s)	88, 550
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	2 cut(s)	74, 791
BfoI	RGCGCY	2 cut(s)	80, 107
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	3 cut(s)	102, 125, 608
BlsI	GCNGC	3 cut(s)	103, 126, 609
Bme1390I	CCNGG	3 cut(s)	88, 342, 550
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	88, 342, 550
BmsI	GCATC	2 cut(s)	465, 546
BpmI	CTGGAG	2 cut(s)	639, 641
BpuEI	CTTGAG	1 cut(s)	566
BpuMI	CCSGG	1 cut(s)	342
BsaAI	YACGTR	2 cut(s)	20, 532
BsaJI	CCNNGG	3 cut(s)	87, 370, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 491, 703
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	88, 550
BseDI	CCNNGG	3 cut(s)	87, 370, 729
BseGI	GGATG	1 cut(s)	804
BseLI	CCNNNNNNNGG	3 cut(s)	113, 491, 703
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	111, 113
Bsh1285I	CGRYCG	2 cut(s)	259, 464
BshFI	GGCC	3 cut(s)	168, 463, 626
BsiEI	CGRYCG	2 cut(s)	259, 464
BsiHKAI	GWGCWC	2 cut(s)	582, 605
BsiSI	CCGG	3 cut(s)	341, 460, 464
BslI	CCNNNNNNNGG	3 cut(s)	113, 491, 703
BsnI	GGCC	3 cut(s)	168, 463, 626
Bsp1286I	GDGCHC	2 cut(s)	582, 605
Bsp143I	GATC	5 cut(s)	337, 347, 352, 435, 616
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	5 cut(s)	255, 267, 608, 651, 734
BspANI	GGCC	3 cut(s)	168, 463, 626
BspCNI	CTCAG	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	4 cut(s)	332, 345, 355, 624
BsrBI	CCGCTC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	87, 370, 729
BssMI	GATC	5 cut(s)	337, 347, 352, 435, 616
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	88, 550
Bst4CI	ACNGT	2 cut(s)	53, 643
Bst6I	CTCTTC	1 cut(s)	176
BstBAI	YACGTR	2 cut(s)	20, 532
BstC8I	GCNNGC	3 cut(s)	36, 605, 661
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	804
BstH2I	RGCGCY	2 cut(s)	80, 107
BstHHI	GCGC	2 cut(s)	79, 106
BstKTI	GATC	5 cut(s)	340, 350, 355, 438, 619
BstMBI	GATC	5 cut(s)	337, 347, 352, 435, 616
BstMCI	CGRYCG	2 cut(s)	259, 464
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	88, 550
BstSCI	CCNGG	3 cut(s)	86, 340, 548
BstV1I	GCAGC	2 cut(s)	111, 113
BstX2I	RGATCY	3 cut(s)	337, 352, 616
BstYI	RGATCY	3 cut(s)	337, 352, 616
BstZI	CGGCCG	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	168, 463, 626
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	804
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	48, 479
Cac8I	GCNNGC	3 cut(s)	36, 605, 661
CfoI	GCGC	2 cut(s)	79, 106
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	371, 592
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	5 cut(s)	339, 349, 354, 437, 618
DpnII	GATC	5 cut(s)	337, 347, 352, 435, 616
EaeI	YGGCCR	1 cut(s)	461
EagI	CGGCCG	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Ecl136II	GAGCTC	2 cut(s)	580, 603
EclXI	CGGCCG	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	582, 605
Eco47I	GGWCC	1 cut(s)	386
Eco47III	AGCGCT	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	461
Eco53kI	GAGCTC	2 cut(s)	580, 603
Eco57I	CTGAAG	1 cut(s)	141
Eco72I	CACGTG	1 cut(s)	532
EcoICRI	GAGCTC	2 cut(s)	580, 603
EcoRII	CCWGG	2 cut(s)	86, 548
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	582, 605
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	374, 595
FaiI	YATR	4 cut(s)	131, 146, 372, 593
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	2 cut(s)	370, 591
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	3 cut(s)	102, 125, 608
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	2 cut(s)	582, 605
Fsp4HI	GCNGC	3 cut(s)	102, 125, 608
FspBI	CTAG	2 cut(s)	74, 791
GlaI	GCGC	2 cut(s)	78, 105
GluI	GCNGC	3 cut(s)	102, 125, 608
GsuI	CTGGAG	2 cut(s)	639, 641
HaeII	RGCGCY	2 cut(s)	80, 107
HaeIII	GGCC	3 cut(s)	168, 463, 626
HapII	CCGG	3 cut(s)	341, 460, 464
HhaI	GCGC	2 cut(s)	79, 106
Hin1II	CATG	2 cut(s)	374, 595
Hin6I	GCGC	2 cut(s)	77, 104
HinP1I	GCGC	2 cut(s)	77, 104
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	3 cut(s)	391, 725, 759
HpaII	CCGG	3 cut(s)	341, 460, 464
Hpy166II	GTNNAC	4 cut(s)	180, 247, 498, 646
Hpy188I	TCNGA	6 cut(s)	352, 440, 518, 674, 715, 750
Hpy188III	TCNNGA	3 cut(s)	575, 598, 620
Hpy8I	GTNNAC	4 cut(s)	180, 247, 498, 646
Hpy99I	CGWCG	3 cut(s)	436, 691, 719
HpyAV	CCTTC	3 cut(s)	144, 290, 829
HpyCH4III	ACNGT	2 cut(s)	53, 643
HpyCH4IV	ACGT	2 cut(s)	19, 531
HpyCH4V	TGCA	4 cut(s)	38, 783, 819, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	2 cut(s)	19, 531
Hsp92II	CATG	2 cut(s)	374, 595
HspAI	GCGC	2 cut(s)	77, 104
Kzo9I	GATC	5 cut(s)	337, 347, 352, 435, 616
LmnI	GCTCC	2 cut(s)	98, 658
Lsp1109I	GCAGC	2 cut(s)	111, 113
LweI	GCATC	2 cut(s)	465, 546
MaeI	CTAG	2 cut(s)	74, 791
MaeII	ACGT	2 cut(s)	19, 531
MalI	GATC	5 cut(s)	339, 349, 354, 437, 618
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	5 cut(s)	337, 347, 352, 435, 616
MboII	GAAGA	6 cut(s)	147, 163, 358, 565, 844, 862
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	3 cut(s)	337, 352, 616
MhlI	GDGCHC	2 cut(s)	582, 605
MluCI	AATT	5 cut(s)	315, 453, 668, 753, 820
MlyI	GAGTC	2 cut(s)	385, 734
MmeI	TCCRAC	4 cut(s)	41, 253, 684, 738
MnlI	CCTC	8 cut(s)	17, 50, 179, 338, 397, 512, 616, 739
MseI	TTAA	2 cut(s)	381, 452
MslI	CAYNNNNRTG	1 cut(s)	596
MspI	CCGG	3 cut(s)	341, 460, 464
MspR9I	CCNGG	3 cut(s)	88, 342, 550
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	88, 550
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	337, 347, 352, 435, 616
NlaIII	CATG	2 cut(s)	374, 595
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	759
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	103, 126, 609
PleI	GAGTC	2 cut(s)	385, 733
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	2 cut(s)	385, 733
Ppu21I	YACGTR	2 cut(s)	20, 532
Psp124BI	GAGCTC	2 cut(s)	582, 605
Psp6I	CCWGG	2 cut(s)	86, 548
PspCI	CACGTG	1 cut(s)	532
PspGI	CCWGG	2 cut(s)	86, 548
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	3 cut(s)	337, 352, 616
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	596
SacI	GAGCTC	2 cut(s)	582, 605
SaqAI	TTAA	2 cut(s)	381, 452
SatI	GCNGC	3 cut(s)	102, 125, 608
Sau3AI	GATC	5 cut(s)	337, 347, 352, 435, 616
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	2 cut(s)	385, 734
ScrFI	CCNGG	3 cut(s)	88, 342, 550
SduI	GDGCHC	2 cut(s)	582, 605
SfaNI	GCATC	2 cut(s)	465, 546
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	5 cut(s)	315, 453, 668, 753, 820
SsiI	CCGC	5 cut(s)	255, 267, 608, 651, 734
SspMI	CTAG	2 cut(s)	74, 791
SstI	GAGCTC	2 cut(s)	582, 605
StyD4I	CCNGG	3 cut(s)	86, 340, 548
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	53, 643
TaiI	ACGT	2 cut(s)	22, 534
TaqI	TCGA	3 cut(s)	7, 434, 689
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	315, 453, 668, 753, 820
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	759
Tru1I	TTAA	2 cut(s)	381, 452
Tru9I	TTAA	2 cut(s)	381, 452
TscAI	CASTG	2 cut(s)	48, 486
TseI	GCWGC	2 cut(s)	101, 124
TspDTI	ATGAA	5 cut(s)	133, 559, 580, 845, 863
TspGWI	ACGGA	2 cut(s)	730, 734
TspRI	CASTG	2 cut(s)	48, 486
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	74, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.