RchiOBHm_Chr2g0116051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001695
Physical Location & Seq
Reverse (-)
28287870 .. 28288805
936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48914

Sequence Viewer

Length: 219 bp
ATGCGGGTGGATCGATGTGAATGTCTTACGGGGGACGTCGGGGATGGTTTGTTGGAAAGACTCGATTTAGGGTGTCTGAAGCGGCTTCAAAGCGTGGATCGGTGGTGGTGGATCGTGCGGAGGTTCCGTCGACGGTGCTTGCAAAACTTTGGCTCTAGGCATGGGCTGCACTTGAGAGAGATATCGGCGGCGGCGGTTTTGGTGGCTGGACTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.41

Weight (kDa)

10.48

Isoelectric Point (pI)

73.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AccI GTMKAC 1 cut(s) 130
AciI CCGC 7 cut(s) 4, 82, 118, 188, 191, 194, 214
AclWI GGATC 3 cut(s) 18, 105, 119
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 1 cut(s) 89
AlwI GGATC 3 cut(s) 18, 105, 119
ApeKI GCWGC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 38
BfaI CTAG 1 cut(s) 156
BisI GCNGC 4 cut(s) 83, 167, 189, 192
BlsI GCNGC 4 cut(s) 84, 168, 190, 193
BmiI GGNNCC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
BseCI ATCGAT 1 cut(s) 13
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 13
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 10, 97, 111
BspACI CCGC 7 cut(s) 4, 82, 118, 188, 191, 194, 214
BspDI ATCGAT 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 3 cut(s) 18, 105, 119
BssMI GATC 3 cut(s) 10, 97, 111
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 3 cut(s) 13, 100, 114
BstMBI GATC 3 cut(s) 10, 97, 111
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 13
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 140
ClaI ATCGAT 1 cut(s) 13
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 85, 153, 166, 206
CviKI_1 RGCY 4 cut(s) 85, 153, 166, 206
DpnI GATC 3 cut(s) 12, 99, 113
DpnII GATC 3 cut(s) 10, 97, 111
Eco32I GATATC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 183
FaeI CATG 1 cut(s) 164
FaiI YATR 1 cut(s) 162
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 83, 167, 189, 192
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 4 cut(s) 83, 167, 189, 192
FspBI CTAG 1 cut(s) 156
GluI GCNGC 4 cut(s) 83, 167, 189, 192
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 164
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 3 cut(s) 41, 132, 135
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 142, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 10, 97, 111
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 36
MalI GATC 3 cut(s) 12, 99, 113
MboI GATC 3 cut(s) 10, 97, 111
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 10, 97, 111
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 84, 168, 190, 193
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 129
SatI GCNGC 4 cut(s) 83, 167, 189, 192
Sau3AI GATC 3 cut(s) 10, 97, 111
SchI GAGTC 1 cut(s) 54
SetI ASST 2 cut(s) 39, 125
SgrDI CGTCGACG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SsiI CCGC 7 cut(s) 4, 82, 118, 188, 191, 194, 214
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 13, 63, 130
TauI GCSGC 3 cut(s) 85, 191, 194
TseI GCWGC 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 156
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.