Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Forward (+)

69467069 .. 69468469

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG435200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATCGAGTCCGCGCGAAGTTGCTACTTGCTGTTGCTGAGAGCCAAGAGAGTGTTGGGTCGGTAGTGAAGGGTGGTAGAGGTTGTCGGGTGGAGTGGGATCTGAGTGGTATAGGATCTGGATCATTGCAGCGGTCTGCGTTAGGCTTGGTGGTTGCGAGAGCGGGGATTAGAGGTTGTCAGTTCATTTCTTCGGCGGTTGAGGAAGACGAGATTAGAGGCTTATCCACTCCTTCTTGGGTGGCGGAGGTCATTAGAGGCAGACTGAGATTAGGTTTTGACAATGGTGGTCGAGTCCATCATGTTGGTGGTGGAAGGTGGGATCCGGGAGGGTCGGATCTCTTGCTTTTCTTTCATGGTATCAAAGGGCCGACTAATCTTGGTGAGGATGGTGGCAGTTCGTGTGTGCTGTCGTCGATCAGAGTAGGTTTTAGCCGGGCAAATTACCTGACAATGCTACTACCAAATTGTGGGTTCGCGACTTGTGACGTCGACTTCTTCTTGACAATTGATGACCTCCGTCGACGGAGTGGTATAGACAATGTTGCAGGCGACAGGCCACCGGGTAGTTTGGTGGATGGATGGTATGTCGACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.15

Weight (kDa)

6.3

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	3 cut(s)	492, 523, 591
AccII	CGCG	3 cut(s)	15, 17, 479
AciI	CCGC	5 cut(s)	13, 133, 164, 197, 245
AclWI	GGATC	7 cut(s)	12, 108, 124, 130, 317, 330, 345
AcyI	GRCGYC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	470
AlwI	GGATC	7 cut(s)	12, 108, 124, 130, 317, 330, 345
AoxI	GGCC	2 cut(s)	368, 557
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	3 cut(s)	327, 437, 564
AsuHPI	GGTGA	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	4 cut(s)	306, 383, 572, 576
BcnI	CCSGG	3 cut(s)	327, 437, 564
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	3 cut(s)	327, 437, 564
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	327, 437, 564
BoxI	GACNNNNGTC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	213
BpuMI	CCSGG	3 cut(s)	327, 437, 564
BsaBI	GATNNNNATC	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	121
BseGI	GGATG	3 cut(s)	394, 583, 587
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	30, 95, 257
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	3 cut(s)	15, 17, 479
BshFI	GGCC	2 cut(s)	370, 559
BsiSI	CCGG	3 cut(s)	326, 436, 563
BslI	CCNNNNNNNGG	1 cut(s)	470
BsnI	GGCC	2 cut(s)	370, 559
Bsp143I	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
Bsp68I	TCGCGA	1 cut(s)	479
BspACI	CCGC	5 cut(s)	13, 133, 164, 197, 245
BspANI	GGCC	2 cut(s)	370, 559
BspCNI	CTCAG	3 cut(s)	31, 96, 258
BspFNI	CGCG	3 cut(s)	15, 17, 479
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	7 cut(s)	12, 108, 124, 130, 317, 330, 345
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	125
BssMI	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
BssNI	GRCGYC	1 cut(s)	489
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	39, 104, 266
BstF5I	GGATG	3 cut(s)	394, 583, 587
BstFNI	CGCG	3 cut(s)	15, 17, 479
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	7 cut(s)	7, 103, 119, 125, 325, 340, 420
BstMBI	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	325, 435, 562
BstUI	CGCG	3 cut(s)	15, 17, 479
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	4 cut(s)	100, 116, 322, 337
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	4 cut(s)	100, 116, 322, 337
BsuRI	GGCC	2 cut(s)	370, 559
BtsCI	GGATG	3 cut(s)	394, 583, 587
BtuMI	TCGCGA	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	368
CviAII	CATG	2 cut(s)	302, 356
CviJI	RGCY	7 cut(s)	45, 147, 222, 370, 435, 559, 597
CviKI_1	RGCY	7 cut(s)	45, 147, 222, 370, 435, 559, 597
DdeI	CTNAG	3 cut(s)	39, 104, 266
DpnI	GATC	7 cut(s)	6, 102, 118, 124, 324, 339, 419
DpnII	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
EciI	GGCGGA	1 cut(s)	260
FaeI	CATG	2 cut(s)	305, 359
FaiI	YATR	5 cut(s)	113, 303, 357, 536, 588
FatI	CATG	2 cut(s)	301, 355
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	3 cut(s)	492, 523, 591
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	3 cut(s)	401, 590, 594
Fsp4HI	GCNGC	1 cut(s)	131
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	370, 559
HapII	CCGG	3 cut(s)	326, 436, 563
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	305, 359
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	3 cut(s)	493, 524, 592
HindII	GTYRAC	3 cut(s)	493, 524, 592
HinfI	GANTC	2 cut(s)	9, 294
HpaII	CCGG	3 cut(s)	326, 436, 563
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	493, 524, 592
Hpy188I	TCNGA	3 cut(s)	105, 337, 422
Hpy188III	TCNNGA	3 cut(s)	120, 478, 502
Hpy8I	GTNNAC	3 cut(s)	493, 524, 592
Hpy99I	CGWCG	5 cut(s)	418, 494, 525, 528, 596
HpyAV	CCTTC	3 cut(s)	64, 243, 309
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	130, 548
HpyF3I	CTNAG	3 cut(s)	39, 104, 266
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	305, 359
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
LpnPI	CCDG	7 cut(s)	105, 339, 449, 461, 534, 541, 576
Lsp1109I	GCAGC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	7 cut(s)	6, 102, 118, 124, 324, 339, 419
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
MboII	GAAGA	3 cut(s)	183, 218, 490
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	4 cut(s)	100, 116, 322, 337
MluCI	AATT	3 cut(s)	442, 466, 507
MlyI	GAGTC	2 cut(s)	18, 303
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	74, 167, 196, 212, 241, 251, 323, 379, 527
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	3 cut(s)	326, 436, 563
MspR9I	CCNGG	3 cut(s)	327, 437, 564
MunI	CAATTG	1 cut(s)	507
MvnI	CGCG	3 cut(s)	15, 17, 479
NciI	CCSGG	3 cut(s)	327, 437, 564
NdeII	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
NlaIII	CATG	2 cut(s)	305, 359
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	485
NruI	TCGCGA	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	2 cut(s)	17, 302
PpsI	GAGTC	2 cut(s)	17, 302
PshAI	GACNNNNGTC	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	368
PsuI	RGATCY	4 cut(s)	100, 116, 322, 337
RruI	TCGCGA	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	306
SalI	GTCGAC	3 cut(s)	491, 522, 590
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	7 cut(s)	4, 100, 116, 122, 322, 337, 417
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	18, 303
ScrFI	CCNGG	3 cut(s)	327, 437, 564
SetI	ASST	9 cut(s)	85, 178, 252, 277, 320, 430, 450, 492, 519
SgrDI	CGTCGACG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	442, 466, 507
SsiI	CCGC	5 cut(s)	13, 133, 164, 197, 245
StyD4I	CCNGG	3 cut(s)	325, 435, 562
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	6 cut(s)	7, 292, 416, 492, 523, 591
TasI	AATT	3 cut(s)	442, 466, 507
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	175, 344
TspGWI	ACGGA	2 cut(s)	509, 541
Van91I	CCANNNNNTGG	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 305
XmiI	GTMKAC	3 cut(s)	492, 523, 591
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.