Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001695

Physical Location & Seq

Genomic Coordinates Reverse (-)

50195949 .. 50200534

Gene Structure 4586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGGATTTGATTTCCTCCAAGCATGAAAGCAAGACCAGAGAAAATGCAGGCTTAGGAAAGATTGTGATGAAAAAGGAAAATATGAGAGTGGAGCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTGTAGCAGTAGTCTTACAGCTGATCACTATCCAGAGTTCCAGACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCGTGGAGCCGGTCACGGAGCTTGGTGTTGGTCACAATGTTACAACACTAGACCTTGCAGCATCTGGGATCAACCAGATCCAGTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTACGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGATGCTGCCGTATATGCTACTGCTGTGATGCCAGGTCCTTCTCTTAGCTACTTGACTATACATGATAAGGGTTTGTGGAGCAACGCCGTTTCGGGTCCGTCGCTACCTATACCTTCTCCATTCATGGAGATTTCTTTAGGCTTTGGCTTCTTCTTGTTTACCCTTGCTGTTTCCAATGGAAAAGGGTTAGGCTTGTGTTTTCTATTCAGTGGTTTGTTGCTTGTCAATGATGGCGGTCGTATTAGATGGGTTGGAGTAGCGTTGCTGGTGAGAGGATGGCTTGTTAGGACGGCAGTTGTTGGTGTTGGAGAGTGGGATCCGGGAGGATCGGATCTTTTGCCTTTCTTCCATGGTCCTCTCAGAGGGACGACTCATCTCTGCGAGGATGGTGGTATTTCGAGTGAGTTGTCGTCGATCAGACCATGTTTTTTCATTCTCTGGCTGGACCTGACGATGCCACTGCAAGATTACGGGTTCGCCGCTTGTGCTATTCTCAGAGGAGTTGCGGTTGACTTCTTCTTGGCAGTTAATGACCTTCGACGACGGAGCGGTACAGACAGTGTTGCAAGCAATAGGCCACCAAGTGGCTTGGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

342

Amino Acids

36.85

Weight (kDa)

6.45

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	71 - 168	6.9e-06	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	110 - 159	4.4e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329941 RchiOBHm_Chr2g0116051
rosa_laevigata	RLG00000010061 RLG00000015100 RLG00000017267 RLG00000020060 RLG00000024130 RLG00000029849 RLG00000029852 RLG00000030949 RLG00000035555 RLG00000035915
rosa_multiflora	Rmu_sc0001577.1_g000006 Rmu_sc0003147.1_g000017 Rmu_sc0003942.1_g000012 Rmu_sc0004340.1_g000007 Rmu_sc0008049.1_g000005 Rmu_sc0032474.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129360 Rroxscaffold_3G00247570 Rroxscaffold_3G00255580 Rroxscaffold_5G00366470 Rroxscaffold_6G00401720
rosa_samantha	Rh1DG105500 Rh2AG436900 Rh2AG437000 Rh2BG444500 Rh2CG071600 Rh2CG423200 Rh2DG379100 Rh2DG454800 Rh4BG257200 Rh4CG022900 Rh4CG225800 Rh4DG254600 Rh5BG423300 Rh5CG410600 Rh5CG447100 Rh5DG435200 Rh5DG437900 Rh6AG489100 Rh6BG498600 Rh6CG503400 Rh6DG158100 Rh6DG435700 Rh6DG489600 Rh7AG208500 Rh7CG198400 Rh7DG193000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	376, 1010
AccBSI	CCGCTC	1 cut(s)	975
AciI	CCGC	4 cut(s)	660, 906, 932, 975
AclWI	GGATC	6 cut(s)	292, 296, 737, 750, 760, 765
AcoI	YGGCCR	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	1010
AfaI	GTAC	2 cut(s)	305, 979
AfiI	CCNNNNNNNGG	4 cut(s)	376, 408, 788, 1010
AjnI	CCWGG	2 cut(s)	360, 457
AluBI	AGCT	4 cut(s)	161, 241, 375, 474
AluI	AGCT	4 cut(s)	161, 241, 375, 474
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	6 cut(s)	292, 296, 737, 750, 760, 765
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	367, 1001
ApeKI	GCWGC	2 cut(s)	278, 431
AspS9I	GGNCC	4 cut(s)	461, 521, 779, 871
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	4 cut(s)	461, 521, 779, 871
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	290, 418
BccI	CCATC	4 cut(s)	650, 666, 696, 806
BceAI	ACGGC	4 cut(s)	371, 419, 497, 732
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BciT130I	CCWGG	2 cut(s)	362, 459
BclI	TGATCA	2 cut(s)	163, 318
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	3 cut(s)	279, 432, 906
BlsI	GCNGC	3 cut(s)	280, 433, 907
Bme1390I	CCNGG	3 cut(s)	362, 459, 747
Bme18I	GGWCC	4 cut(s)	461, 521, 779, 871
BmgT120I	GGNCC	4 cut(s)	461, 521, 779, 871
BmiI	GGNNCC	5 cut(s)	228, 385, 413, 522, 744
BmrFI	CCNGG	3 cut(s)	362, 459, 747
BmsI	GCATC	4 cut(s)	290, 418, 444, 870
Bpu10I	CCTNAGC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	402, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 408, 788, 1010
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	362, 459
BseDI	CCNNGG	2 cut(s)	402, 775
BseGI	GGATG	2 cut(s)	707, 817
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	376, 408, 788, 1010
BseMII	CTCAG	3 cut(s)	408, 799, 934
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	2 cut(s)	290, 418
Bsh1285I	CGRYCG	1 cut(s)	664
BshFI	GGCC	2 cut(s)	369, 1003
BsiEI	CGRYCG	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	230, 746
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	4 cut(s)	376, 408, 788, 1010
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	369, 1003
Bso31I	GGTCTC	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
Bsp19I	CCATGG	2 cut(s)	402, 775
BspACI	CCGC	4 cut(s)	660, 906, 932, 975
BspANI	GGCC	2 cut(s)	369, 1003
BspCNI	CTCAG	3 cut(s)	409, 798, 933
BspLI	GGNNCC	5 cut(s)	228, 385, 413, 522, 744
BspPI	GGATC	6 cut(s)	292, 296, 737, 750, 760, 765
BspTNI	GGTCTC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	975
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	402, 775
BssMI	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
BssT1I	CCWWGG	2 cut(s)	402, 775
Bst2UI	CCWGG	2 cut(s)	362, 459
Bst4CI	ACNGT	1 cut(s)	986
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	52, 994
BstDEI	CTNAG	5 cut(s)	55, 417, 470, 785, 920
BstDSI	CCRYGG	2 cut(s)	402, 775
BstENI	CCTNNNNNAGG	1 cut(s)	786
BstF5I	GGATG	2 cut(s)	707, 817
BstKTI	GATC	8 cut(s)	166, 291, 300, 321, 745, 755, 760, 843
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
BstMCI	CGRYCG	1 cut(s)	664
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 440, 911
BstNI	CCWGG	2 cut(s)	362, 459
BstSCI	CCNGG	3 cut(s)	360, 457, 745
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	290, 418
BstX2I	RGATCY	3 cut(s)	297, 742, 757
BstYI	RGATCY	3 cut(s)	297, 742, 757
BsuRI	GGCC	2 cut(s)	369, 1003
BtgI	CCRYGG	2 cut(s)	402, 775
BtsCI	GGATG	2 cut(s)	707, 817
BtsI	GCAGTG	1 cut(s)	884
BtsIMutI	CAGTG	3 cut(s)	640, 884, 991
Cac8I	GCNNGC	2 cut(s)	52, 994
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	4 cut(s)	461, 521, 779, 871
Csp6I	GTAC	2 cut(s)	304, 978
CviAII	CATG	6 cut(s)	26, 403, 488, 550, 776, 849
CviQI	GTAC	2 cut(s)	304, 978
DdeI	CTNAG	5 cut(s)	55, 417, 470, 785, 920
DpnI	GATC	8 cut(s)	165, 290, 299, 320, 744, 754, 759, 842
DpnII	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
DraIII	CACNNNGTG	1 cut(s)	1010
EaeI	YGGCCR	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	402, 775
Eco31I	GGTCTC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	4 cut(s)	461, 521, 779, 871
EcoNI	CCTNNNNNAGG	1 cut(s)	786
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	360, 457
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	402, 775
ErhI	CCWWGG	2 cut(s)	402, 775
FaeI	CATG	6 cut(s)	29, 406, 491, 553, 779, 852
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	6 cut(s)	25, 402, 487, 549, 775, 848
FbaI	TGATCA	2 cut(s)	163, 318
Fnu4HI	GCNGC	3 cut(s)	279, 432, 906
FokI	GGATG	2 cut(s)	714, 824
Fsp4HI	GCNGC	3 cut(s)	279, 432, 906
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	3 cut(s)	279, 432, 906
HaeIII	GGCC	2 cut(s)	369, 1003
HapII	CCGG	2 cut(s)	230, 746
Hin1II	CATG	6 cut(s)	29, 406, 491, 553, 779, 852
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	2 cut(s)	138, 796
HpaII	CCGG	2 cut(s)	230, 746
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	3 cut(s)	585, 937, 1021
Hpy188I	TCNGA	4 cut(s)	757, 788, 845, 923
Hpy188III	TCNNGA	2 cut(s)	173, 181
Hpy8I	GTNNAC	3 cut(s)	585, 937, 1021
Hpy99I	CGWCG	4 cut(s)	529, 841, 969, 972
HpyAV	CCTTC	3 cut(s)	474, 549, 971
HpyCH4III	ACNGT	1 cut(s)	986
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	50, 278, 889, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 440, 911
HpyF3I	CTNAG	5 cut(s)	55, 417, 470, 785, 920
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	6 cut(s)	29, 406, 491, 553, 779, 852
Ksp22I	TGATCA	2 cut(s)	163, 318
Kzo9I	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
LmnI	GCTCC	6 cut(s)	94, 226, 238, 383, 504, 972
Lsp1109I	GCAGC	2 cut(s)	290, 418
LweI	GCATC	4 cut(s)	290, 418, 444, 870
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	232, 251, 259
MalI	GATC	8 cut(s)	165, 290, 299, 320, 744, 754, 759, 842
MbiI	CCGCTC	1 cut(s)	975
MboI	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
MboII	GAAGA	4 cut(s)	213, 568, 763, 934
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	3 cut(s)	297, 742, 757
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	2 cut(s)	396, 423
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	2 cut(s)	658, 712
Mox20I	TGGCCA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	1 cut(s)	954
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	230, 746
MspR9I	CCNGG	3 cut(s)	362, 459, 747
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	362, 459
MwoI	GCNNNNNNNGC	3 cut(s)	213, 440, 911
NciI	CCSGG	1 cut(s)	747
NcoI	CCATGG	2 cut(s)	402, 775
NdeII	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
NlaIII	CATG	6 cut(s)	29, 406, 491, 553, 779, 852
NlaIV	GGNNCC	5 cut(s)	228, 385, 413, 522, 744
NmuCI	GTSAC	2 cut(s)	232, 251
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	2 cut(s)	376, 1010
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	280, 433, 907
PleI	GAGTC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	790
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	360, 457
PspGI	CCWGG	2 cut(s)	360, 457
PspN4I	GGNNCC	5 cut(s)	228, 385, 413, 522, 744
PspPI	GGNCC	4 cut(s)	461, 521, 779, 871
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	3 cut(s)	297, 742, 757
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	305, 979
RsaNI	GTAC	2 cut(s)	304, 978
SaqAI	TTAA	1 cut(s)	954
SatI	GCNGC	3 cut(s)	279, 432, 906
Sau3AI	GATC	8 cut(s)	163, 288, 297, 318, 742, 752, 757, 840
Sau96I	GGNCC	4 cut(s)	461, 521, 779, 871
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	3 cut(s)	362, 459, 747
SfaNI	GCATC	4 cut(s)	290, 418, 444, 870
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	4 cut(s)	461, 521, 779, 871
Sse9I	AATT	2 cut(s)	396, 423
SsiI	CCGC	4 cut(s)	660, 906, 932, 975
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	360, 457, 745
StyI	CCWWGG	2 cut(s)	402, 775
TaaI	ACNGT	1 cut(s)	986
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	824, 839, 964
TasI	AATT	2 cut(s)	396, 423
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	3 cut(s)	640, 891, 991
TseFI	GTSAC	2 cut(s)	232, 251
TseI	GCWGC	2 cut(s)	278, 431
Tsp45I	GTSAC	2 cut(s)	232, 251
TspDTI	ATGAA	5 cut(s)	17, 42, 86, 538, 847
TspGWI	ACGGA	3 cut(s)	251, 513, 985
TspRI	CASTG	3 cut(s)	640, 891, 991
Van91I	CCANNNNNTGG	2 cut(s)	376, 1010
VpaK11BI	GGWCC	4 cut(s)	461, 521, 779, 871
XagI	CCTNNNNNAGG	1 cut(s)	786
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 377
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.